fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G47140 GATA27 GATA transcription factor 27 (.1)

>AT5G47140.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
EcoRI G|AATTC 286
HindIII A|AGCTT 1012, 1116, 1170
NheI G|CTAGC 328, 631
XhoI C|TCGAG 611


Click here to view TAIR data

>AT5G47140.1 length:1413
ATGGGGAAGC AAGGTCCTTG CTATCACTGT GGAGTTACAA GTACACCTCT 
50
ATGGAGAAAC GGGCCACCAG AGAAGCCGGT GTTGTGCAAT GCGTGTGGTT 
100
CGAGGTGGAG AACTAAAGGA TCATTAGTAA ACTACACACC TCTTCATGCT 
150
CGTGCTGAAG GTGATGAGAC TGAGATTGAG GATCATAGAA CTCAAACGGT 
200
GATGATTAAG GGAATGTCTT TGAACAAAAA GATTCCCAAG AGGAAACCAT 
250
ATCAAGAAAA CTTCACAGTG AAAAGAGCTA ACTTGGAATT CCATACCGGT 
300
TTCAAGAGGA AGGCTCTGGA TGAAGAAGCT AGCAATAGAT CGAGTTCAGG 
350
ATCGGTTGTA TCAAACTCCG AGAGCTGTGC ACAATCTAAT GCGTGGGACT 
400
CGACTTTTCC TTGTAAGAGA AGGACATGTG TGGGACGTCC AAAGGCAGCT 
450
TCTTCTGTTG AAAAGCTCAC AAAGGATCTT TATACTATTC TACAAGAACA 
500
GCAATCTTCT TGTCTCTCTG GTACTTCAGA GGAAGATTTG CTTTTTGAGA 
550
ATGAAACACC AATGCTGTTA GGACATGGTA GTGTTCTTAT GAGAGATCCT 
600
CACTCAGGTG CTCGAGAAGA GGAATCTGAA GCTAGCTCAC TCTTAGTTGA 
650
GAGCAGCAAG TCTTCATCAG TTCATTCTGT TAAATTTGGT GGAAAAGCAA 
700
TGAAGCAGGA GCAAGTGAAG AGGAGCAAAT CTCAAGTCTT AGGAAGACAT 
750
AGTTCACTAC TCTGTAGCAT AGATTTGAAG GATGTTTTCA ACTTTGATGA 
800
GTTCATAGAA AATTTCACAG AGGAAGAACA GCAAAAACTG ATGAAATTAC 
850
TTCCTCAAGT TGACTCTGTT GATCGTCCTG ATAGCCTCAG AAGCATGTTT 
900
GAGAGTTCTC AATTCAAAGA GAACTTATCC TTGTTTCAGC AACTTGTGGC 
950
AGATGGTGTT TTTGAGACAA ATTCGTCTTA TGCAAAACTT GAAGACATTA 
1000
AGACACTTGC AAAGCTTGCT TTATCAGATC CTAACAAATC CCATTTGTTG 
1050
GAAAGCTATT ACATGCTCAA GAGAAGAGAG ATTGAAGACT GTGTTACTAC 
1100
AACATCAAGG GTCTCAAGCT TGAGTCCATC GAATAATAAT AGTCTTGTAA 
1150
CCATTGAAAG ACCTTGTGAA AGCTTAAACC AAAACTTCTC AGAGACAAGA 
1200
GGTGTGATGA GAAGCCCGAA AGAAGTGATG AAGATTAGAT CAAAGCACAC 
1250
CGAAGAGAAT TTAGAGAATA GTGTATCTTC CTTTAAACCT GTGAGCTGTG 
1300
GTGGACCTCT GGTGTTTAGC TATGAAGATA ATGATATTTC TGATCAGGAT 
1350
CTTCTTCTTG ATGTGCCGTC GAACGGCTCA TTCCCTCAAG CAGAGCTTCT 
1400
AAACATGATA TGA
1450

>AT5G47140.1 longest ORF length:470
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA 
50
RAEGDETEIE DHRTQTVMIK GMSLNKKIPK RKPYQENFTV KRANLEFHTG 
100
FKRKALDEEA SNRSSSGSVV SNSESCAQSN AWDSTFPCKR RTCVGRPKAA 
150
SSVEKLTKDL YTILQEQQSS CLSGTSEEDL LFENETPMLL GHGSVLMRDP 
200
HSGAREEESE ASSLLVESSK SSSVHSVKFG GKAMKQEQVK RSKSQVLGRH 
250
SSLLCSIDLK DVFNFDEFIE NFTEEEQQKL MKLLPQVDSV DRPDSLRSMF 
300
ESSQFKENLS LFQQLVADGV FETNSSYAKL EDIKTLAKLA LSDPNKSHLL 
350
ESYYMLKRRE IEDCVTTTSR VSSLSPSNNN SLVTIERPCE SLNQNFSETR 
400
GVMRSPKEVM KIRSKHTEEN LENSVSSFKP VSCGGPLVFS YEDNDISDQD 
450
LLLDVPSNGS FPQAELLNMI 
500