Locus |
Common name |
Short description |
AT5G47230 |
ATERF5, ATERF-5, ERF5 |
ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) |
>AT5G47230.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BglII
| A|GATCT |
229 |
HpaI
| GTT|AAC |
757 |
NcoI
| C|CATGG |
82 |
PvuII
| CAG|CTG |
407 |
StyI
| C|C[AT][AT]GG |
82 |
Click here to view TAIR data
>AT5G47230.1 length:903
ATGGCGACTC CTAACGAAGT ATCTGCACTT TGGTTCATCG AGAAACATCT | 50 |
ACTCGACGAG GCTTCTCCTG TGGCTACAGA TCCATGGATG AAGCACGAAT | 100 |
CATCATCAGC AACAGAATCT AGCTCTGACT CTTCTTCTAT CATCTTCGGA | 150 |
TCATCGTCCT CTTCTTTCGC CCCAATTGAT TTCTCTGAAT CCGTATGCAA | 200 |
ACCTGAAATC ATCGATCTCG ATACTCCCAG ATCTATGGAA TTTCTATCGA | 250 |
TTCCATTTGA ATTTGACTCA GAAGTTTCTG TTTCTGATTT CGATTTTAAA | 300 |
CCTTCTAATC AAAATCAAAA TCAGTTTGAA CCGGAGCTTA AATCTCAAAT | 350 |
TCGTAAACCG CCATTGAAGA TTTCGCTTCC AGCTAAAACA GAGTGGATTC | 400 |
AATTCGCAGC TGAAAACACC AAACCGGAAG TTACTAAACC GGTTTCGGAA | 450 |
GAAGAGAAGA AGCATTACAG AGGAGTAAGA CAAAGACCGT GGGGGAAATT | 500 |
CGCGGCGGAG ATTCGTGACC CGAATAAACG CGGATCTCGC GTTTGGCTTG | 550 |
GGACGTTTGA TACAGCGATT GAAGCGGCTA GAGCTTATGA CGAAGCAGCG | 600 |
TTTAGACTAC GAGGATCGAA AGCGATTTTG AATTTCCCTC TTGAAGTTGG | 650 |
GAAGTGGAAA CCACGCGCCG ATGAAGGTGA GAAGAAACGG AAGAGAGACG | 700 |
ATGATGAGAA AGTGACTGTG GTTGAGAAAG TGTTGAAGAC GGAACAGAGC | 750 |
GTTGACGTTA ACGGTGGAGA GACGTTTCCG TTTGTAACGT CGAATTTAAC | 800 |
GGAATTATGT GACTGGGATT TAACGGGGTT TCTTAACTTT CCGCTTCTGT | 850 |
CGCCGTTATC TCCTCATCCA CCGTTTGGTT ATTCCCAGTT GACCGTTGTT | 900 |
TGA | 950 |
>AT5G47230.1 longest ORF length:300
MATPNEVSAL WFIEKHLLDE ASPVATDPWM KHESSSATES SSDSSSIIFG | 50 |
SSSSSFAPID FSESVCKPEI IDLDTPRSME FLSIPFEFDS EVSVSDFDFK | 100 |
PSNQNQNQFE PELKSQIRKP PLKISLPAKT EWIQFAAENT KPEVTKPVSE | 150 |
EEKKHYRGVR QRPWGKFAAE IRDPNKRGSR VWLGTFDTAI EAARAYDEAA | 200 |
FRLRGSKAIL NFPLEVGKWK PRADEGEKKR KRDDDEKVTV VEKVLKTEQS | 250 |
VDVNGGETFP FVTSNLTELC DWDLTGFLNF PLLSPLSPHP PFGYSQLTVV | 300 |
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