fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G47640 NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1)

>AT5G47640.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 149
NdeI CA|TATG 502


Click here to view TAIR data

>AT5G47640.1 length:573
ATGGGGGATT CCGACAGGGA TTCCGGTGGA GGGCAAAACG GGAACAACCA 
50
GAACGGACAG TCCTCCTTGT CTCCAAGAGA GCAAGACAGG TTCTTGCCGA 
100
TCGCTAACGT CAGCCGGATC ATGAAGAAGG CCTTGCCCGC CAACGCCAAG 
150
ATCTCTAAAG ATGCCAAAGA GACGATGCAG GAGTGTGTCT CCGAGTTCAT 
200
CAGCTTCGTC ACCGGAGAAG CATCTGATAA GTGTCAGAAG GAGAAGAGGA 
250
AGACGATCAA CGGAGACGAT TTGCTCTGGG CTATGACTAC TCTAGGTTTT 
300
GAGGATTATG TTGAGCCATT GAAAGTTTAC TTGCAGAGGT TTAGGGAGAT 
350
CGAAGGGGAG AGGACTGGAC TAGGGAGGCC ACAGACTGGT GGTGAGGTCG 
400
GAGAGCATCA GAGAGATGCT GTCGGAGATG GCGGTGGGTT CTACGGTGGT 
450
GGTGGTGGGA TGCAGTATCA CCAACATCAT CAGTTTCTTC ACCAGCAGAA 
500
CCATATGTAT GGAGCCACAG GTGGCGGTAG CGACAGTGGA GGTGGAGCTG 
550
CCTCCGGTAG GACAAGGACT TAA
600

>AT5G47640.1 longest ORF length:190
MGDSDRDSGG GQNGNNQNGQ SSLSPREQDR FLPIANVSRI MKKALPANAK 
50
ISKDAKETMQ ECVSEFISFV TGEASDKCQK EKRKTINGDD LLWAMTTLGF 
100
EDYVEPLKVY LQRFREIEGE RTGLGRPQTG GEVGEHQRDA VGDGGGFYGG 
150
GGGMQYHQHH QFLHQQNHMY GATGGGSDSG GGAASGRTRT 
200