fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G47670 NF-YB6, L1L "nuclear factor Y, subunit B6", LEC1-LIKE, nuclear factor Y, subunit B6 (.1.2)

>AT5G47670.2 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 155
EcoRI G|AATTC 28
PstI CTGCA|G 378
StyI C|C[AT][AT]GG 170


Click here to view TAIR data

>AT5G47670.2 length:618
ATGGCAGAGG GCAGTATGCG TCCTCCAGAA TTCAACCAGC CTAACAAAAC 
50
CAGTAATGGT GGTGAGGAGG AGTGCACGGT GAGGGAGCAA GACAGGTTCA 
100
TGCCTATTGC CAACGTGATA CGGATCATGC GGAGGATCTT ACCTGCTCAC 
150
GCCAAGATCT CAGATGACTC CAAGGAGACG ATCCAAGAGT GTGTTTCGGA 
200
GTACATCAGC TTCATAACAG GGGAGGCTAA TGAGCGGTGC CAGCGGGAAC 
250
AGCGCAAGAC CATCACTGCT GAGGACGTCT TGTGGGCAAT GAGCAAGCTC 
300
GGTTTTGATG ACTACATCGA ACCCCTCACG TTGTACCTCC ACCGCTACAG 
350
AGAGTTGGAA GGTGAAAGAG GGGTTAGCTG CAGTGCTGGG TCCGTTAGTA 
400
TGACCAACGG CTTGGTGGTC AAGAGGCCTA ATGGGACCAT GACCGAGTAT 
450
GGAGCCTACG GGCCTGTGCC AGGGATTCAC ATGGCGCAGT ACCATTATCG 
500
TCATCAGAAC GGGTTTGTTT TCAGTGGTAA CGAACCTAAT TCTAAGATGA 
550
GTGGTTCATC TTCAGGAGCA AGTGGCGCCA GAGTTGAAGT ATTTCCGACT 
600
CAACAACATA AGTACTGA
650

>AT5G47670.2 longest ORF length:205
MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH 
50
AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL 
100
GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY 
150
GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT 
200
QQHKY
250