|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G48150 | PAT1 | phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) |
>AT5G48150.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccIII(BspMII), AfeI, AflII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvaII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrI, BssHII, BstBI, BstEII, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, NaeI, , NarI, NciI, NcoI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsrII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, SwaI, TspRI, Tth111I, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AccII(FnuDII) | CG|CG | 765, 1019, 1144 |
| AciI | C|CGC | 764, 1018, 1101, 1143 |
| AclI | AA|CGTT | 871 |
| AflIII | A|CPuPyGT | 169, 632 |
| AgeI | A|CCGGT | 75, 1025 |
| AluI | AG|CT | 21, 60, 358, 382, 478, 507, 511, 573, 745, 852, 949, 1046, 1255, 1278, 1414 |
| ApoI | Pu|AATTPy | 1350 |
| AseI | AT|TAAT | 310, 1198 |
| AvaI | C|PyCGPuG | 109, 342, 931, 1113 |
| AvrII | C|CTAGG | 1284 |
| BanII | GPuGCPy|C | 1279 |
| BfaI | C|TAG | 12, 329, 497, 509, 564, 747, 953, 1217, 1283, 1397 |
| BglI | GCCNNNN|NGGC | 758 |
| BlpI | GC|TNAGC | 851, 860 |
| BsaJI | C|CNNGG | 293, 766, 911, 930, 943, 1058, 1114, 1284, 1343 |
| BsaWI | [AT]|CCGG[AT] | 75, 1025 |
| BsiEI | CGPuPy|CG | 1023 |
| BsiHKAI | G[AT]GC[AT]|C | 1005, 1279 |
| BsoBI | C|PyCGPuG | 109, 342, 931, 1113 |
| Bsp1286I | G[GAT]GC[CAT]|C | 1005, 1279 |
| BspDI | AT|CGAT | 787 |
| BsrDI | GCAATGNN| | 663 |
| BsrFI | Pu|CCGGPy | 75, 561, 1025 |
| BsrGI | T|GTACA | 2 |
| BssKI | |CCNGG | 734, 753, 942 |
| BssSI | C|TCGTG | 812, 1455 |
| BstAPI | GCANNNN|NTGC | 645 |
| BstF5I | GGATGNN| | 190, 1311, 1434 |
| BstNI | CC|[AT]GG | 734, 753, 942 |
| BstUI | CG|CG | 765, 1019, 1144 |
| BtgI | C|CPuPyGG | 293, 766 |
| Cac8I | GCN|NGC | 510, 565, 855 |
| Cfr10I | [AG]|CCGG[TC] | 75, 561, 1025 |
| ClaI | AT|CGAT | 787 |
| DdeI | C|TNAG | 63, 655, 825, 850, 859, 1371, 1382 |
| DpnI | GA-CH3|TC | 321, 362, 398, 1181, 1259 |
| DpnII | |GATC | 321, 362, 398, 1181, 1259 |
| DrdI | GACNNNN|NNGTC | 265 |
| EcoRI | G|AATTC | 1350 |
| Fnu4HI | GC|NGC | 8, 434, 506, 744, 1101, 1143 |
| HaeIII | GG|CC | 243, 750, 759, 821 |
| HhaI | GCG|C | 503 |
| HinP1I | G|CGC | 503 |
| HincII | GTPy|PuAC | 79 |
| HindIII | A|AGCTT | 61, 853 |
| HinfI | G|ANTC | 123, 249, 279, 288, 299, 713, 770, 844, 1013, 1067, 1083, 1155, 1169, 1337 |
| HpaI | GTT|AAC | 79 |
| HpaII | C|CGG | 74, 245, 560, 1024 |
| Hpy188I | TCN|GA | 390, 773, 909, 1383 |
| Hpy99I | CG[AT]CG| | 517 |
| HpyCH4III | ACN|GT | 95, 231, 470, 1301 |
| HpyCH4IV | A|CGT | 870 |
| HpyCH4V | TG|CA | 272, 588, 742, 1434 |
| MboI | |GATC | 321, 362, 398, 1181, 1259 |
| MfeI | C|AATTG | 1160 |
| MseI | T|TAA | 78, 309, 353, 543, 885, 915, 1197, 1359 |
| MspA1I | C[AC]G|C[GT]G | 766 |
| MspI | C|CGG | 74, 245, 560, 1024 |
| MwoI | GCNNNNN|NNGC | 510, 645, 744, 758, 855, 1277, 1458 |
| N.BstNBI | GAGTCNNNN|N | 304, 718, 1088, 1160, 1342 |
| NdeI | CA|TATG | 158, 985 |
| NheI | G|CTAGC | 510, 565 |
| NlaIII | CATG| | 168, 372, 586, 631, 1120, 1245 |
| NlaIV | GGN|NCC | 243 |
| NsiI | ATGCA|T | 1435 |
| NspI | PuCATG|Py | 169, 587, 632, 1246 |
| PaeR7I | C|TCGAG | 109, 342 |
| PciI | A|CATGT | 169, 632 |
| PsiI | TTA|TAA | 135 |
| PspGI | |CC[AT]GG | 734, 753, 942 |
| RsaI | GT|AC | 1, 67, 102, 1390 |
| SacI | GAGCT|C | 1279 |
| SacII | CCGC|GG | 766 |
| Sau3AI | |GATC | 321, 362, 398, 1181, 1259 |
| Sau96I | G|GNCC | 243, 759 |
| ScrFI | CC|NGG | 734, 753, 942 |
| SfiI | GGCCNNNN|NGGCC | 759 |
| SmlI | C|TPyPuAG | 25, 109, 342 |
| StuI | AGG|CCT | 751 |
| StyI | C|C[AT][AT]GG | 1058, 1284, 1343 |
| Taqƒ¿I | T|CGA | 108, 225, 267, 341, 786, 879, 937, 1438 |
| TfiI | G|A[AT]TC | 288, 770, 1013 |
| TliI | C|TCGAG | 109, 342 |
| TseI | G|C[AT]GC | 8, 506, 744 |
| Tsp45I | |GT[CG]AC | 723, 1065, 1167, 1298 |
| Tsp509I | |AATT | 1159, 1349 |
| XbaI | T|CTAGA | 330 |
| XhoI | C|TCGAG | 109, 342 |
| XmnI | GAANN|NNTTC | 202 |
Click here to view TAIR data
>AT5G48150.1 length:1473
ATGTACAAGC AGCCTAGACA AGAGCTTGAG GCTTATTATT TTGAGCCTAA | 50 |
CTCTGTTGAG AAGCTTAGGT ACTTACCGGT TAACAACTCT CGTAAACGGT | 100 |
TTTGTACGCT CGAGCCATTT CCTGACTCTC CTCCTTATAA TGCTCTATCT | 150 |
ACTGCTACAT ATGATGATAC ATGTGGCTCT TGTGTAACGG ATGAGTTGAA | 200 |
TGACTTCAAA CACAAGATTA GGGAAATCGA AACGGTGATG ATGGGGCCGG | 250 |
ACTCGTTGGA CTTACTTGTC GATTGCACGG ACTCATTTGA TTCCACGGCG | 300 |
AGTCAAGAGA TTAATGGTTG GAGATCAACT CTAGAGGCTA TCTCGAGGCG | 350 |
GGATTTAAGA GCTGATCTTG TTTCATGTGC CAAAGCTATG TCGGAAAATG | 400 |
ATCTTATGAT GGCTCATTCA ATGATGGAGA AGTTGCGGCA GATGGTTTCG | 450 |
GTTTCTGGTG AGCCTATTCA ACGGTTGGGA GCTTACTTAT TGGAAGGTCT | 500 |
AGTGGCGCAG CTAGCTTCGT CGGGCAGTTC TATATACAAA GCACTTAATA | 550 |
GGTGTCCTGA ACCGGCTAGC ACAGAGCTTC TCTCTTACAT GCACATTCTC | 600 |
TATGAGGTTT GTCCTTACTT CAAGTTTGGA TACATGTCAG CAAATGGTGC | 650 |
TATTGCTGAG GCAATGAAGG AAGAAAACAG AGTTCACATT ATTGATTTCC | 700 |
AAATCGGTCA AGGGAGTCAA TGGGTCACTC TTATCCAGGC TTTTGCAGCT | 750 |
AGGCCTGGTG GGCCTCCGCG GATTCGGATA ACGGGTATCG ATGATATGAC | 800 |
TTCAGCGTAT GCTCGTGGAG GTGGCCTAAG CATTGTTGGA AATAGACTCG | 850 |
CTAAGCTTGC TAAGCAGTTC AACGTTCCAT TCGAGTTTAA CTCGGTATCG | 900 |
GTGTCAGTTT CCGAGGTTAA ACCTAAAAAC CTCGGGGTTC GACCTGGGGA | 950 |
AGCTCTAGCC GTAAACTTTG CCTTTGTGCT TCATCATATG CCAGACGAAA | 1000 |
GCGTGAGCAC CGAGAATCAC CGCGACCGGT TATTGAGAAT GGTGAAGAGC | 1050 |
TTATCTCCCA AGGTGGTGAC TCTTGTGGAA CAAGAGTCAA ACACAAACAC | 1100 |
AGCCGCTTTC TTCCCGAGGT TCATGGAGAC AATGAACTAC TATGCCGCGA | 1150 |
TGTTTGAGTC AATTGATGTG ACTCTACCAA GAGATCACAA ACAGAGGATT | 1200 |
AATGTGGAGC AACATTGTCT AGCAAGAGAT GTCGTGAACA TCATCGCATG | 1250 |
TGAAGGAGCT GATCGGGTGG AGCGACACGA GCTCCTAGGA AAATGGAGGT | 1300 |
CACGGTTTGG GATGGCGGGT TTCACTCCTT ACCCGTTGAG TCCCTTGGTG | 1350 |
AATTCAACCA TTAAAAGTCT GCTTAGGAAC TACTCAGACA AGTACAGGCT | 1400 |
AGAAGAAAGA GATGGAGCTT TGTATCTTGG TTGGATGCAT CGAGATTTGG | 1450 |
TTGCCTCGTG TGCTTGGAAA TGA | 1500 |
>AT5G48150.1 longest ORF length:490
MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS | 50 |
TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA | 100 |
SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS | 150 |
VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL | 200 |
YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA | 250 |
RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS | 300 |
VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS | 350 |
LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI | 400 |
NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV | 450 |
NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK | 500 |