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| Locus | Common name | Short description |
| AT5G48150 | PAT1 | phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) |
>AT5G48150.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, KpnI, NcoI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI
| Name | Recognition sequence | Cut positions |
| EcoRI | G|AATTC | 1350 |
| HindIII | A|AGCTT | 61, 853 |
| HpaI | GTT|AAC | 79 |
| NdeI | CA|TATG | 158, 985 |
| NheI | G|CTAGC | 510, 565 |
| SacI | GAGCT|C | 1279 |
| StyI | C|C[AT][AT]GG | 1058, 1284, 1343 |
| XbaI | T|CTAGA | 330 |
| XhoI | C|TCGAG | 109, 342 |
Click here to view TAIR data
>AT5G48150.1 length:1473
ATGTACAAGC AGCCTAGACA AGAGCTTGAG GCTTATTATT TTGAGCCTAA | 50 |
CTCTGTTGAG AAGCTTAGGT ACTTACCGGT TAACAACTCT CGTAAACGGT | 100 |
TTTGTACGCT CGAGCCATTT CCTGACTCTC CTCCTTATAA TGCTCTATCT | 150 |
ACTGCTACAT ATGATGATAC ATGTGGCTCT TGTGTAACGG ATGAGTTGAA | 200 |
TGACTTCAAA CACAAGATTA GGGAAATCGA AACGGTGATG ATGGGGCCGG | 250 |
ACTCGTTGGA CTTACTTGTC GATTGCACGG ACTCATTTGA TTCCACGGCG | 300 |
AGTCAAGAGA TTAATGGTTG GAGATCAACT CTAGAGGCTA TCTCGAGGCG | 350 |
GGATTTAAGA GCTGATCTTG TTTCATGTGC CAAAGCTATG TCGGAAAATG | 400 |
ATCTTATGAT GGCTCATTCA ATGATGGAGA AGTTGCGGCA GATGGTTTCG | 450 |
GTTTCTGGTG AGCCTATTCA ACGGTTGGGA GCTTACTTAT TGGAAGGTCT | 500 |
AGTGGCGCAG CTAGCTTCGT CGGGCAGTTC TATATACAAA GCACTTAATA | 550 |
GGTGTCCTGA ACCGGCTAGC ACAGAGCTTC TCTCTTACAT GCACATTCTC | 600 |
TATGAGGTTT GTCCTTACTT CAAGTTTGGA TACATGTCAG CAAATGGTGC | 650 |
TATTGCTGAG GCAATGAAGG AAGAAAACAG AGTTCACATT ATTGATTTCC | 700 |
AAATCGGTCA AGGGAGTCAA TGGGTCACTC TTATCCAGGC TTTTGCAGCT | 750 |
AGGCCTGGTG GGCCTCCGCG GATTCGGATA ACGGGTATCG ATGATATGAC | 800 |
TTCAGCGTAT GCTCGTGGAG GTGGCCTAAG CATTGTTGGA AATAGACTCG | 850 |
CTAAGCTTGC TAAGCAGTTC AACGTTCCAT TCGAGTTTAA CTCGGTATCG | 900 |
GTGTCAGTTT CCGAGGTTAA ACCTAAAAAC CTCGGGGTTC GACCTGGGGA | 950 |
AGCTCTAGCC GTAAACTTTG CCTTTGTGCT TCATCATATG CCAGACGAAA | 1000 |
GCGTGAGCAC CGAGAATCAC CGCGACCGGT TATTGAGAAT GGTGAAGAGC | 1050 |
TTATCTCCCA AGGTGGTGAC TCTTGTGGAA CAAGAGTCAA ACACAAACAC | 1100 |
AGCCGCTTTC TTCCCGAGGT TCATGGAGAC AATGAACTAC TATGCCGCGA | 1150 |
TGTTTGAGTC AATTGATGTG ACTCTACCAA GAGATCACAA ACAGAGGATT | 1200 |
AATGTGGAGC AACATTGTCT AGCAAGAGAT GTCGTGAACA TCATCGCATG | 1250 |
TGAAGGAGCT GATCGGGTGG AGCGACACGA GCTCCTAGGA AAATGGAGGT | 1300 |
CACGGTTTGG GATGGCGGGT TTCACTCCTT ACCCGTTGAG TCCCTTGGTG | 1350 |
AATTCAACCA TTAAAAGTCT GCTTAGGAAC TACTCAGACA AGTACAGGCT | 1400 |
AGAAGAAAGA GATGGAGCTT TGTATCTTGG TTGGATGCAT CGAGATTTGG | 1450 |
TTGCCTCGTG TGCTTGGAAA TGA | 1500 |
>AT5G48150.1 longest ORF length:490
MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS | 50 |
TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA | 100 |
SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS | 150 |
VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL | 200 |
YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA | 250 |
RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS | 300 |
VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS | 350 |
LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI | 400 |
NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV | 450 |
NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK | 500 |