|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G48250 | COL10 | B-box type zinc finger protein with CCT domain (.1) |
>AT5G48250.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
| Name | Recognition sequence | Cut positions |
| EcoRI | G|AATTC | 237 |
| EcoRV | GAT|ATC | 632 |
| HindIII | A|AGCTT | 1079 |
| NcoI | C|CATGG | 892 |
| PstI | CTGCA|G | 728 |
| StyI | C|C[AT][AT]GG | 892 |
| XhoI | C|TCGAG | 297 |
Click here to view TAIR data
>AT5G48250.1 length:1122
ATGGGTTATA TGTGTGATTT CTGTGGTGAA CAAAGATCAA TGGTGTATTG | 50 |
TCGATCTGAT GCAGCGTGTT TGTGTCTTTC GTGTGACCGT AATGTTCATT | 100 |
CTGCTAATGC TCTATCGAAA CGTCATTCGC GGACTTTGGT ATGTGAGAGG | 150 |
TGTAATGCAC AGCCAGCTTC TGTCCGGTGT AGTGATGAGA GGGTTTCTCT | 200 |
ATGTCAAAAC TGTGATTGGT CAGGCCATGA CGGCAAGAAT TCTACTACTA | 250 |
CTTCACATCA TAAAAGGCAA ACCATCAATT GTTATTCTGG TTGTCCCTCG | 300 |
AGTGCCGAAT TATCCTCGAT ATGGTCTTTC TGTATGGATT TGAATATCTC | 350 |
TTCTGCTGAA GAATCCGCTT GTGAGCAAGG AATGGGTTTG ATGACTATAG | 400 |
ATGAAGATGG CACAGGAGAA AAATCTGGTG TCCAAAAAAT TAATGTAGAA | 450 |
CAGCCTGAAA CCAGTTCGGC TGCACAAGGT ATGGATCACT CTAGTGTTCC | 500 |
AGAAAATTCA TCAATGGCTA AGGAGCTTGG AGTATGTGAG GATGACTTCA | 550 |
ATGGAAATCT CATTTCAGAT GAAGTAGACT TGGCTCTTGA GAACTATGAA | 600 |
GAACTCTTTG GTTCAGCCTT CAACTCATCA AGATATCTCT TCGAGCACGG | 650 |
TGGAATTGGA AGTCTTTTCG AGAAAGATGA AGCTCATGAG GGCTCAATGC | 700 |
AGCAGCCAGC ATTAAGCAAT AATGCATCTG CAGATTCGTT CATGACTTGT | 750 |
AGAACCGAGC CAATAATTTG CTATTCATCA AAGCCAGCAC ATTCGAATAT | 800 |
CTCCTTCTCT GGCATCACTG GAGAAAGTAA TGCTGGAGAT TTCCAAGATT | 850 |
GTGGGGCGTC ATCGATGAAG CAGCTTTCAA GGGAGCCACA ACCATGGTGC | 900 |
CATCCAACAG CACAGGACAT TATTGCTTCC TCACATGCAA CAACACGTAA | 950 |
TAACGCTGTT ATGCGTTACA AGGAAAAGAA GAAGGCTCGC AAGTTTGACA | 1000 |
AGCGAGTAAG GTATGTCTCT AGGAAAGAAA GGGCTGATGT GAGACGGCGT | 1050 |
GTGAAAGGAC GGTTTGTCAA GTCCGGTGAA GCTTATGATT ACGACCCGAT | 1100 |
GAGCCCAACA AGAAGCTACT GA | 1150 |
>AT5G48250.1 longest ORF length:373
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER | 50 |
CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS | 100 |
SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE | 150 |
QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE | 200 |
ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC | 250 |
RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC | 300 |
HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR | 350 |
VKGRFVKSGE AYDYDPMSPT RSY | 400 |