fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G48890 LATE LATE FLOWERING, C2H2-like zinc finger protein (.1)

>AT5G48890.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
StyI C|C[AT][AT]GG 147, 396
XbaI T|CTAGA 121


Click here to view TAIR data

>AT5G48890.1 length:522
ATGGAAGATC ATTACCATCA AGTAGAAGTG GAGGGAGAAG AAGAGATCAA 
50
GCCAAGCAAA GAAGCCAACA AGACAGACGA AAACACATCA TCATTAAGAA 
100
TATTCCCCTG CCTCTTTTGT TCTAGAAAGT TCCATAGCTC CCAAGCCCTA 
150
GGAGGCCACC AGAACGCCCA CAAGAAGGAG CGAACCGCTG CTAGAAGAGC 
200
CAAAAGGGCT TATGATTTTG TCAACAACAA TGACTTCCTT CACACGTTAC 
250
CTGTTTTCTT ATCCTCTCCC TCTCAACATC ACTTGACCAT CTTAGGCTAC 
300
CCTGCTTCTG CCTCCGTTGC CTGTTTTCCG ACGGTTCATC CCGACCATCC 
350
GATTTTCAAA TCCAGTGGTT CTCATGTCGT GTTGGCTACA TCCCACCAAG 
400
GTAGAGATTG CAAAGGAGGG TACTGTTGTC AACAACGTGT AGACATTTTG 
450
GATCATCATT ATAACGTGGT CAATAGTGAC AAGGGTAAAG ATCAGTGTCT 
500
TGATCTCTCC CTACATTTGT GA
550

>AT5G48890.1 longest ORF length:173
MEDHYHQVEV EGEEEIKPSK EANKTDENTS SLRIFPCLFC SRKFHSSQAL 
50
GGHQNAHKKE RTAARRAKRA YDFVNNNDFL HTLPVFLSSP SQHHLTILGY 
100
PASASVACFP TVHPDHPIFK SSGSHVVLAT SHQGRDCKGG YCCQQRVDIL 
150
DHHYNVVNSD KGKDQCLDLS LHL
200