fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G49200 WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1)

>AT5G49200.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 256
EcoRV GAT|ATC 933
NcoI C|CATGG 365
StyI C|C[AT][AT]GG 16, 181, 365, 547, 558, 944


Click here to view TAIR data

>AT5G49200.1 length:1260
ATGGATTACA AAGCGCCAAG GAGATACTAC TCACACGGAG TTGTTGCGAG 
50
ACAGCAAGAT TTCGCAACAG ATATAGTTAC GAGAAGAAGA CCTTATGTCC 
100
CTTACGACCG TCCAAATAAG TTTTCAAGGA GTCTGGTTTG GACGTCAAAA 
150
GAGTACAAAT CACCCGAGGG CAATAATATG CCAAGGACCA ATGATGTGTC 
200
ACCGAAACCA CCAGTTTTAG GTTTGGCGAG GAAGAATGCT GCTTGTGGGC 
250
CAATGAGATC TTCTAGTCTC AGAAAATGGG TATGTAAGTA TTGGAAAGAT 
300
GGAAAGTGCA AGAGGGGTGA GCAGTGCCAG TTCTTACACT CTTGGTCTTG 
350
TTTCCCTGGA TTGGCCATGG TAGCTTCTCT TGAAGGGCAC AATAAGGAAC 
400
TAAAGGGGAT CGCTCTCCCT GAGGGTTCAG ATAAACTCTT TTCAGTCAGT 
450
ATTGATGGTA CATTGCGAGT TTGGGACTGC AATTCTGGTC AGTGTGTACA 
500
TTCCATCAAC CTTGACGCAG AAGCAGGGTC TCTAATCAGT GAAGGCCCTT 
550
GGGTTTTCCT TGGCTTGCCA AACGCTATAA AGGCTTTTAA CGTTCAAACC 
600
AGTCAAGATT TGCATCTTCA AGCAGCAGGG GTGGTTGGTC AGGTGAATGC 
650
AATGACTATT GCAAACGGAA TGCTTTTTGC TGGAACAAGT TCTGGTAGTA 
700
TCTTAGTCTG GAAAGCTACT ACAGACTCTG AGTCTGATCC ATTCAAATAC 
750
TTGACATCTC TTGAGGGACA TAGTGGTGAA GTCACTTGTT TTGCTGTTGG 
800
AGGTCAAATG CTATACTCTG GTTCTGTCGA TAAAACAATC AAGATGTGGG 
850
ATCTCAACAC CCTGCAATGT ATAATGACCC TGAAGCAACA TACCGGCACT 
900
GTCACTTCAC TCTTATGTTG GGATAAATGT TTGATATCGT CTTCCTTGGA 
950
TGGGACCATA AAAGTTTGGG CTTATTCTGA AAACGGAATC TTGAAAGTTG 
1000
TTCAAACTCG CAGACAAGAA CAGAGTAGTG TTCATGCTCT TTCTGGTATG 
1050
CATGATGCAG AAGCCAAACC GATAATATTC TGCTCTTACC AAAACGGAAC 
1100
CGTTGGCATT TTCGACCTAC CATCTTTTCA AGAAAGAGGA AGGATGTTCT 
1150
CTACGCACAC GATCGCCACA CTCACAATTG GTCCTCAAGG ATTGTTATTC 
1200
AGTGGAGACG AGAGTGGTAA CTTGCGTGTA TGGACCTTAG CTGCTGGCAA 
1250
CAAAGTTTAG 
1300

>AT5G49200.1 longest ORF length:419
MDYKAPRRYY SHGVVARQQD FATDIVTRRR PYVPYDRPNK FSRSLVWTSK 
50
EYKSPEGNNM PRTNDVSPKP PVLGLARKNA ACGPMRSSSL RKWVCKYWKD 
100
GKCKRGEQCQ FLHSWSCFPG LAMVASLEGH NKELKGIALP EGSDKLFSVS 
150
IDGTLRVWDC NSGQCVHSIN LDAEAGSLIS EGPWVFLGLP NAIKAFNVQT 
200
SQDLHLQAAG VVGQVNAMTI ANGMLFAGTS SGSILVWKAT TDSESDPFKY 
250
LTSLEGHSGE VTCFAVGGQM LYSGSVDKTI KMWDLNTLQC IMTLKQHTGT 
300
VTSLLCWDKC LISSSLDGTI KVWAYSENGI LKVVQTRRQE QSSVHALSGM 
350
HDAEAKPIIF CSYQNGTVGI FDLPSFQERG RMFSTHTIAT LTIGPQGLLF 
400
SGDESGNLRV WTLAAGNKV
450