fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G49620 ATMYB78 myb domain protein 78 (.1.2)

>AT5G49620.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 470, 708
EcoRI G|AATTC 46
HindIII A|AGCTT 915
KpnI GGTAC|C 825
NcoI C|CATGG 88
PstI CTGCA|G 198
SacI GAGCT|C 112
StyI C|C[AT][AT]GG 88


Click here to view TAIR data

>AT5G49620.1 length:924
ATGGGTGACA AAGGAAGGAG CTTAAAGATC AACAAGAACA TGGAGGAATT 
50
CACGAAAGTG GAAGAAGAAA TGGACGTAAG GAGAGGTCCA TGGACAGTTG 
100
AGGAAGATTT AGAGCTCATC AATTACATTG CTAGTCATGG TGAAGGTCGA 
150
TGGAACTCTC TCGCTCGTTG CGCCGAACTC AAAAGGACCG GAAAAAGCTG 
200
CAGACTTCGG TGGCTGAACT ATCTCCGACC AGATGTGCGC CGTGGAAACA 
250
TAACCCTCGA AGAACAACTC TTGATTCTTG AACTTCACAC ACGTTGGGGC 
300
AATAGATGGT CTAAGATTGC ACAATATTTA CCAGGAAGAA CGGATAACGA 
350
GATCAAAAAC TATTGGAGAA CACGTGTTCA AAAGCATGCA AAACAGCTTA 
400
AATGCGACGT GAACAGTCAA CAATTTAAAG ACACCATGAA GTATCTTTGG 
450
ATGCCTCGGC TCGTAGAAAG GATCCAAGCC GCGTCCATCG GGTCTGTTTC 
500
CATGTCATCT TGCGTCACCA CCTCCTCAGA TCAGTTCGTG ATCAACAACA 
550
ACAACACCAA CAACGTGGAT AATTTGGCTT TAATGAGTAA CCCTAATGGT 
600
TACATCACGC CGGATAATTC CAGCGTGGCA GTATCTCCTG TATCAGATTT 
650
GACGGAGTGT CAAGTGAGTA GTGAAGTGTG GAAGATTGGT CAGGATGAGA 
700
ATTTGGTGGA TCCAAAAATG ACATCGCCGA ATTATATGGA TAATAGCAGT 
750
GGACTATTAA ACGGAGATTT TACGAAGATG CAAGATCAAA GTGACCTTAA 
800
TTGGTTTGAA AATATTAATG GGATGGTACC AAATTATTCG GACAGTTTTT 
850
GGAACATTGG AAATGATGAA GACTTCTGGC TCTTACAACA ACATCAACAA 
900
GTCCACGACA ATGGAAGCTT CTGA
950

>AT5G49620.1 longest ORF length:307
MGDKGRSLKI NKNMEEFTKV EEEMDVRRGP WTVEEDLELI NYIASHGEGR 
50
WNSLARCAEL KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHTRWG 
100
NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLKCDVNSQ QFKDTMKYLW 
150
MPRLVERIQA ASIGSVSMSS CVTTSSDQFV INNNNTNNVD NLALMSNPNG 
200
YITPDNSSVA VSPVSDLTEC QVSSEVWKIG QDENLVDPKM TSPNYMDNSS 
250
GLLNGDFTKM QDQSDLNWFE NINGMVPNYS DSFWNIGNDE DFWLLQQHQQ 
300
VHDNGSF
350