fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G49700 Predicted AT-hook DNA-binding family protein (.1)

>AT5G49700.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 797
HindIII A|AGCTT 46
NcoI C|CATGG 417
SacI GAGCT|C 812
StyI C|C[AT][AT]GG 417


Click here to view TAIR data

>AT5G49700.1 length:831
ATGAAAGGTG AATACAGAGA GCAAAAGAGT AACGAAATGT TTTCCAAGCT 
50
TCCTCATCAT CAACAACAAC AGCAACAACA ACAACAACAA CACTCTCTTA 
100
CCTCTCACTT CCACCTCTCC TCCACCGTAA CCCCCACCGT CGATGACTCC 
150
TCCATCGAAG TGGTCCGACG TCCACGTGGC AGACCACCAG GTTCCAAAAA 
200
CAAACCTAAA CCACCCGTCT TCGTCACACG TGACACCGAC CCTCCTATGA 
250
GTCCTTACAT CCTCGAAGTT CCTTCAGGAA ACGACGTCGT CGAAGCCATC 
300
AACCGTTTCT GCCGCCGTAA ATCCATCGGA GTCTGCGTCC TTAGTGGCTC 
350
TGGCTCTGTA GCTAACGTCA CTTTACGTCA GCCATCACCG GCAGCTCTTG 
400
GCTCTACCAT AACTTTCCAT GGAAAGTTTG ATCTCCTCTC CGTCTCCGCA 
450
ACGTTTCTCC CTCCTCCGCC TCGTACTTCC TTGTCTCCTC CCGTTTCTAA 
500
CTTCTTCACC GTCTCTCTCG CTGGACCTCA AGGACAAATC ATCGGAGGGT 
550
TCGTCGCTGG TCCACTTATT TCGGCAGGAA CAGTTTACGT CATCGCCGCA 
600
AGTTTCAACA ACCCTTCTTA TCACCGGTTA CCGGCGGAAG AAGAGCAAAA 
650
ACACTCGGCG GGGACAGGGG AAAGAGAGGG ACAATCTCCG CCGGTCTCTG 
700
GTGGCGGTGA AGAGTCAGGA CAGATGGCGG GAAGTGGAGG AGAGTCGTGT 
750
GGGGTATCAA TGTACAGTTG CCACATGGGT GGCTCTGATG TTATTTGGGC 
800
CCCTACAGCC AGAGCTCCAC CGCCATACTA A
850

>AT5G49700.1 longest ORF length:276
MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS 
50
SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI 
100
NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA 
150
TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA 
200
SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC 
250
GVSMYSCHMG GSDVIWAPTA RAPPPY
300