fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G50470 NF-YC7 "nuclear factor Y, subunit C7", nuclear factor Y, subunit C7 (.1)

>AT5G50470.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 379, 515
PstI CTGCA|G 248
PvuII CAG|CTG 602
StyI C|C[AT][AT]GG 420


Click here to view TAIR data

>AT5G50470.1 length:639
ATGGAAGAGA ACAACGGCAA CAACAACCAC TACCTGCCGC AACCATCGTC 
50
TTCCCAACTG CCGCCGCCAC CATTGTATTA TCAATCAATG CCGTTGCCGT 
100
CATATTCACT GCCGCTGCCG TACTCACCGC AGATGCGGAA TTATTGGATT 
150
GCGCAGATGG GAAACGCAAC TGATGTTAAG CATCATGCGT TTCCACTAAC 
200
CAGGATAAAG AAAATCATGA AGTCCAACCC GGAAGTGAAC ATGGTCACTG 
250
CAGAGGCTCC GGTCCTTATA TCGAAGGCCT GTGAGATGCT CATTCTTGAT 
300
CTCACAATGC GATCGTGGCT TCATACCGTG GAGGGCGGTC GCCAAACTCT 
350
CAAGAGATCC GATACGCTCA CGAGATCCGA TATCTCCGCC GCAACGACTC 
400
GTAGTTTCAA ATTTACCTTC CTTGGCGACG TTGTCCCAAG AGACCCTTCC 
450
GTCGTTACCG ATGATCCCGT GCTACATCCG GACGGTGAAG TACTTCCTCC 
500
GGGAACGGTG ATAGGATATC CGGTGTTTGA TTGTAATGGT GTGTACGCGT 
550
CACCGCCACA GATGCAGGAG TGGCCGGCGG TGCCTGGTGA CGGAGAGGAG 
600
GCAGCTGGGG AAATTGGAGG AAGCAGCGGC GGTAATTGA
650

>AT5G50470.1 longest ORF length:212
MEENNGNNNH YLPQPSSSQL PPPPLYYQSM PLPSYSLPLP YSPQMRNYWI 
50
AQMGNATDVK HHAFPLTRIK KIMKSNPEVN MVTAEAPVLI SKACEMLILD 
100
LTMRSWLHTV EGGRQTLKRS DTLTRSDISA ATTRSFKFTF LGDVVPRDPS 
150
VVTDDPVLHP DGEVLPPGTV IGYPVFDCNG VYASPPQMQE WPAVPGDGEE 
200
AAGEIGGSSG GN
250