fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G50480 NF-YC6 "nuclear factor Y, subunit C6", nuclear factor Y, subunit C6 (.1)

>AT5G50480.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NcoI, NdeI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 334
NheI G|CTAGC 352
PvuII CAG|CTG 73


Click here to view TAIR data

>AT5G50480.1 length:609
ATGGCTGAGA ACAACAACAA CAACGGCGAC AACATGAACA ACGACAACCA 
50
CCAGCAACCA CCGTCGTACT CGCAGCTGCC GCCGATGGCA TCATCCAACC 
100
CTCAGTTACG TAATTACTGG ATTGAGCAGA TGGAAACCGT CTCGGATTTC 
150
AAAAACCGTC AGCTTCCATT GGCTCGAATT AAGAAGATCA TGAAGGCTGA 
200
TCCAGATGTG CACATGGTCT CCGCAGAGGC TCCGATCATC TTCGCAAAGG 
250
CTTGCGAAAT GTTCATCGTT GATCTCACGA TGCGGTCGTG GCTCAAAGCC 
300
GAGGAGAACA AACGCCACAC GCTTCAGAAA TCGGATATCT CCAACGCAGT 
350
GGCTAGCTCT TTCACCTACG ATTTCCTTCT TGATGTTGTC CCTAAGGACG 
400
AGTCTATCGC CACCGCTGAT CCTGGCTTTG TGGCTATGCC ACATCCTGAC 
450
GGTGGAGGAG TACCGCAATA TTATTATCCA CCGGGAGTGG TGATGGGAAC 
500
TCCTATGGTT GGTAGTGGAA TGTACGCGCC ATCGCAGGCG TGGCCAGCAG 
550
CGGCTGGTGA CGGGGAGGAT GATGCTGAGG ATAATGGAGG AAACGGCGGC 
600
GGAAATTGA
650

>AT5G50480.1 longest ORF length:202
MAENNNNNGD NMNNDNHQQP PSYSQLPPMA SSNPQLRNYW IEQMETVSDF 
50
KNRQLPLARI KKIMKADPDV HMVSAEAPII FAKACEMFIV DLTMRSWLKA 
100
EENKRHTLQK SDISNAVASS FTYDFLLDVV PKDESIATAD PGFVAMPHPD 
150
GGGVPQYYYP PGVVMGTPMV GSGMYAPSQA WPAAAGDGED DAEDNGGNGG 
200
GN
250