Locus |
Common name |
Short description |
AT5G50670 |
SPL13B |
SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) |
>AT5G50670.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name |
Recognition sequence |
Cut positions |
XhoI
| C|TCGAG |
246, 822 |
Click here to view TAIR data
>AT5G50670.1 length:1080
ATGGACTGGA ATTTCAAACT TAGCTCTGGT TATTTATCTG GATTCGATCA | 50 |
AGAACCAGAT TTATCACCAA TGGATGGTTC GATCTCGTTT GGTGGGTCGT | 100 |
CACAGTCAAA AGCGGATTTT TCATTTGATC TAAAACTTGG AAGAAACATT | 150 |
GGAAACTCTT CCTCTGTTTT TGGTGATACA GAGCAAGTGA TTAGTCTTAG | 200 |
TAAGTGGAAA GATAGTGCTT TAGCTAAACC AGAAGGTTCA AGAAGCTCGA | 250 |
GTTCAAAGAG AACAAGAGGG AATGGTGTTG GAACCAACCA GATGCCGATT | 300 |
TGTCTTGTTG ATGGATGTGA TTCTGATTTT AGTAATTGTA GAGAGTATCA | 350 |
TAAGAGACAT AAAGTTTGTG ATGTTCATTC AAAAACTCCT GTGGTTACTA | 400 |
TTAATGGTCA TAAACAGAGG TTTTGTCAAC AATGCAGCAG GTTTCATGCT | 450 |
TTGGAGGAGT TTGATGAAGG GAAGAGAAGT TGTAGGAAAC GTCTTGATGG | 500 |
ACATAATCGA AGACGACGGA AGCCGCAGCC TGAACATATC GGTCGTCCTG | 550 |
CCAACTTCTT TACGGGTTTT CAAGGTAGCA AATTGCTAGA GTTTTCTGGT | 600 |
GGTTCACATG TGTTTCCAAC TACATCTGTG TTGAACCCGA GCTGGGGAAA | 650 |
TAGTCTTGTA AGCGTTGCTG TAGCCGCCAA TGGTTCGAGT TATGGGCAGA | 700 |
GCCAGAGCTA TGTTGTTGGT TCTTCTCCTG CAAAGACAGG GATAATGTTT | 750 |
CCAATCTCTT CTTCTCCAAA CAGTACCAGA AGCATAGCAA AACAATTCCC | 800 |
TTTCTTGCAA GAAGAAGAAA GCTCGAGAAC CGCATCGTTG TGTGAGAGAA | 850 |
TGACGAGTTG CATCCATGAC TCTGATTGTG CTCTCTCTCT TCTGTCATCC | 900 |
TCCTCGTCGT CAGTCCCTCA TTTGCTTCAA CCACCACTTT CTTTGTCCCA | 950 |
AGAAGCAGTT GAGACAGTTT TTTACGGGTC GGGATTGTTT GAGAATGCGA | 1000 |
GTGCAGTCTC TGATGGATCG GTTATATCCG GTAACGAGGC TGTCCGTCTT | 1050 |
CCGCAGACAT TCCCGTTTCA TTGGGAGTAG | 1100 |
>AT5G50670.1 longest ORF length:359
MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI | 50 |
GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI | 100 |
CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA | 150 |
LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG | 200 |
GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF | 250 |
PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS | 300 |
SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL | 350 |
PQTFPFHWE | 400 |
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