fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G50670 SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)

>AT5G50670.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI
Name Recognition sequence Cut positions
XhoI C|TCGAG 246, 822


Click here to view TAIR data

>AT5G50670.1 length:1080
ATGGACTGGA ATTTCAAACT TAGCTCTGGT TATTTATCTG GATTCGATCA 
50
AGAACCAGAT TTATCACCAA TGGATGGTTC GATCTCGTTT GGTGGGTCGT 
100
CACAGTCAAA AGCGGATTTT TCATTTGATC TAAAACTTGG AAGAAACATT 
150
GGAAACTCTT CCTCTGTTTT TGGTGATACA GAGCAAGTGA TTAGTCTTAG 
200
TAAGTGGAAA GATAGTGCTT TAGCTAAACC AGAAGGTTCA AGAAGCTCGA 
250
GTTCAAAGAG AACAAGAGGG AATGGTGTTG GAACCAACCA GATGCCGATT 
300
TGTCTTGTTG ATGGATGTGA TTCTGATTTT AGTAATTGTA GAGAGTATCA 
350
TAAGAGACAT AAAGTTTGTG ATGTTCATTC AAAAACTCCT GTGGTTACTA 
400
TTAATGGTCA TAAACAGAGG TTTTGTCAAC AATGCAGCAG GTTTCATGCT 
450
TTGGAGGAGT TTGATGAAGG GAAGAGAAGT TGTAGGAAAC GTCTTGATGG 
500
ACATAATCGA AGACGACGGA AGCCGCAGCC TGAACATATC GGTCGTCCTG 
550
CCAACTTCTT TACGGGTTTT CAAGGTAGCA AATTGCTAGA GTTTTCTGGT 
600
GGTTCACATG TGTTTCCAAC TACATCTGTG TTGAACCCGA GCTGGGGAAA 
650
TAGTCTTGTA AGCGTTGCTG TAGCCGCCAA TGGTTCGAGT TATGGGCAGA 
700
GCCAGAGCTA TGTTGTTGGT TCTTCTCCTG CAAAGACAGG GATAATGTTT 
750
CCAATCTCTT CTTCTCCAAA CAGTACCAGA AGCATAGCAA AACAATTCCC 
800
TTTCTTGCAA GAAGAAGAAA GCTCGAGAAC CGCATCGTTG TGTGAGAGAA 
850
TGACGAGTTG CATCCATGAC TCTGATTGTG CTCTCTCTCT TCTGTCATCC 
900
TCCTCGTCGT CAGTCCCTCA TTTGCTTCAA CCACCACTTT CTTTGTCCCA 
950
AGAAGCAGTT GAGACAGTTT TTTACGGGTC GGGATTGTTT GAGAATGCGA 
1000
GTGCAGTCTC TGATGGATCG GTTATATCCG GTAACGAGGC TGTCCGTCTT 
1050
CCGCAGACAT TCCCGTTTCA TTGGGAGTAG 
1100

>AT5G50670.1 longest ORF length:359
MDWNFKLSSG YLSGFDQEPD LSPMDGSISF GGSSQSKADF SFDLKLGRNI 
50
GNSSSVFGDT EQVISLSKWK DSALAKPEGS RSSSSKRTRG NGVGTNQMPI 
100
CLVDGCDSDF SNCREYHKRH KVCDVHSKTP VVTINGHKQR FCQQCSRFHA 
150
LEEFDEGKRS CRKRLDGHNR RRRKPQPEHI GRPANFFTGF QGSKLLEFSG 
200
GSHVFPTTSV LNPSWGNSLV SVAVAANGSS YGQSQSYVVG SSPAKTGIMF 
250
PISSSPNSTR SIAKQFPFLQ EEESSRTASL CERMTSCIHD SDCALSLLSS 
300
SSSSVPHLLQ PPLSLSQEAV ETVFYGSGLF ENASAVSDGS VISGNEAVRL 
350
PQTFPFHWE
400