fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G50820 ANAC097 NAC domain containing protein 97 (.1)

>AT5G50820.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SpeI
Name Recognition sequence Cut positions
BglII A|GATCT 84
NcoI C|CATGG 172, 388
SacI GAGCT|C 148
SmaI CCC|GGG 55
StyI C|C[AT][AT]GG 172, 388
XbaI T|CTAGA 421
XhoI C|TCGAG 371


Click here to view TAIR data

>AT5G50820.1 length:582
ATGGACATTT CTGCGCAGAG ATTTGCCATG AACGGAAGAA GCATGAGACT 
50
CCCTCCCGGG TTTCGGTTCG ATCCCGATGA TGAAGATCTT GTGTTCGAGT 
100
ATCTCGCCAA GAAGGTCCTC CACCGTCCAA TGGACTTCGA TCTCCCTGAG 
150
CTCCGTTCTT GCAATGTTGA TCCATGGGAC TTGCTAGGAG AGAAGAACAA 
200
GGAAGTGTAT TACTTCGTGA AGAAGGAAGA GCGAGAGAGG AAGGGAAGAG 
250
AGACGTTATC CGGTTATTGG GAAGAGTGTG AAGAAGAGGA AGTAATGGAG 
300
GCTGGTGGTC GTGATTGTAT TCATTTAGAA GGAAGGAGAA AGACATTTGC 
350
TTTCTTTATT GGAAAAAAAC CTCGAGGGAC AATAACTCCA TGGATCATGT 
400
ACGAGTTCCG ACTTCTTTCC TCTAGAGCTA CAAGGTGGTC ATCGTCCCCT 
450
CTACCTCGGG GTGAGGTAGG AAAATGGAGG GCGGTGAAAG TCGTAGTGAA 
500
GGAAGAGAAT GATGAAGAGA TGGTGGAGGA TGAGCACGAG TCTGACGAGT 
550
CTGATGGCGA GGAAGTTATT CAAAGCCGGT GA
600

>AT5G50820.1 longest ORF length:193
MDISAQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE 
50
LRSCNVDPWD LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME 
100
AGGRDCIHLE GRRKTFAFFI GKKPRGTITP WIMYEFRLLS SRATRWSSSP 
150
LPRGEVGKWR AVKVVVKEEN DEEMVEDEHE SDESDGEEVI QSR
200