fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G51190 Integrase-type DNA-binding superfamily protein (.1)

>AT5G51190.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 48
NcoI C|CATGG 235, 314
PvuII CAG|CTG 481
StyI C|C[AT][AT]GG 235, 314


Click here to view TAIR data

>AT5G51190.1 length:666
ATGGCTTCTT CACATCAACA ACAGCAAGAA CAAGACCAGT CAGCTTTAGA 
50
TCTCATAACC CAACACCTTC TTACTGATTT CCCTTCCTTA GACACCTTTG 
100
CCTCCACCAT CCACCACTGC ACCACCTCAA CTCTAAGCCA ACGCAAACCA 
150
CCTCTTGCCA CTATAGCAGT TCCTACTACT GCACCGGTGG TTCAAGAGAA 
200
TGATCAAAGG CATTACAGAG GCGTCAGGAG AAGACCATGG GGTAAGTATG 
250
CGGCTGAGAT CAGAGACCCA AACAAGAAAG GTGTTCGTGT CTGGTTAGGC 
300
ACTTTTGACA CAGCCATGGA AGCTGCAAGA GGTTATGACA AGGCAGCTTT 
350
TAAACTACGA GGAAGCAAAG CTATTCTTAA CTTCCCACTT GAAGCAGGAA 
400
AGCATGAGGA CTTGGGAGAC AACAAGAAGA CTATTTCTTT AAAAGCAAAG 
450
AGGAAGAGAC AGGTGACGGA GGATGAAAGC CAGCTGATCA GCCGTAAAGC 
500
TGTTAAGAGG GAAGAAGCTC AGGTTCAGGC TGATGCTTGT CCATTAACGC 
550
CATCAAGTTG GAAGGGGTTT TGGGACGGAG CAGACAGTAA AGACATGGGA 
600
ATATTTTCCG TGCCTCTGTT ATCTCCTTGT CCATCTCTTG GACACTCTCA 
650
ACTCGTAGTT ACTTAA
700

>AT5G51190.1 longest ORF length:221
MASSHQQQQE QDQSALDLIT QHLLTDFPSL DTFASTIHHC TTSTLSQRKP 
50
PLATIAVPTT APVVQENDQR HYRGVRRRPW GKYAAEIRDP NKKGVRVWLG 
100
TFDTAMEAAR GYDKAAFKLR GSKAILNFPL EAGKHEDLGD NKKTISLKAK 
150
RKRQVTEDES QLISRKAVKR EEAQVQADAC PLTPSSWKGF WDGADSKDMG 
200
IFSVPLLSPC PSLGHSQLVV T
250