fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G51230 AtEMF2, CYR1, VEF2, EMF2 CYTOKININ RESISTANT 1, EMBRYONIC FLOWER 2, VEFS-Box of polycomb protein (.1.2.3)

>AT5G51230.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI
Name Recognition sequence Cut positions
BamHI G|GATCC 1401
EcoRV GAT|ATC 1019, 1116
NcoI C|CATGG 1544, 1729
PstI CTGCA|G 362, 803, 1379
SacI GAGCT|C 771, 1215, 1535
StyI C|C[AT][AT]GG 1121, 1544, 1729
XbaI T|CTAGA 1551
XhoI C|TCGAG 768


Click here to view TAIR data

>AT5G51230.1 length:1896
ATGCCAGGCA TTCCTCTTGT TAGTCGTGAA ACCTCTTCTT GTTCAAGAAG 
50
CACAGAGCAG ATGTGCCATG AAGACTCCCG TCTGCGTATT TCGGAAGAGG 
100
AGGAGATTGC TGCTGAAGAG AGCTTGGCTG CCTATTGCAA GCCTGTTGAA 
150
CTCTACAATA TCATTCAACG CCGTGCTATT AGGAATCCCT TGTTTCTTCA 
200
GCGATGTTTG CATTATAAGA TTGAGGCAAA ACATAAAAGG AGAATACAAA 
250
TGACTGTATT CCTCTCGGGC GCTATAGATG CTGGGGTACA AACTCAAAAA 
300
TTATTCCCTC TGTATATTTT GTTGGCAAGA CTCGTTTCTC CTAAGCCTGT 
350
CGCTGAGTAT TCTGCAGTAT ATAGGTTCAG TCGAGCATGT ATCCTAACTG 
400
GTGGATTGGG GGTTGATGGA GTTAGTCAAG CCCAAGCCAA CTTTCTTCTC 
450
CCTGATATGA ATAGACTCGC ATTGGAGGCA AAATCAGGAT CACTCGCTAT 
500
CTTGTTTATC AGCTTTGCTG GTGCGCAAAA TTCTCAATTT GGCATTGATT 
550
CAGGCAAGAT TCATTCAGGA AATATAGGAG GACATTGTTT ATGGAGCAAA 
600
ATACCTCTGC AATCACTGTA TGCGTCGTGG CAGAAATCAC CAAACATGGA 
650
CTTGGGACAG AGAGTAGACA CAGTCTCTCT TGTTGAAATG CAGCCTTGCT 
700
TCATAAAGCT AAAGTCCATG AGTGAGGAAA AGTGTGTCTC GATTCAGGTG 
750
CCCAGCAATC CACTCACCTC GAGCTCTCCG CAGCAAGTGC AAGTCACCAT 
800
ATCTGCAGAA GAAGTTGGGT CAACGGAAAA ATCTCCTTAT AGTTCATTTT 
850
CATATAATGA CATCTCTTCC TCTTCCTTGT TGCAAATTAT CAGGTTGAGA 
900
ACAGGAAATG TAGTTTTCAA CTACAGATAC TATAACAACA AATTGCAGAA 
950
GACTGAAGTA ACTGAAGACT TTTCTTGTCC ATTCTGCTTA GTAAAATGTG 
1000
CCAGTTTCAA GGGCCTGAGA TATCACTTGC CATCAACCCA CGATCTCCTC 
1050
AATTTCGAGT TTTGGGTAAC TGAAGAATTT CAGGCGGTAA ATGTCTCCCT 
1100
CAAGACTGAG ACAATGATAT CCAAGGTTAA TGAGGATGAC GTTGACCCAA 
1150
AGCAGCAAAC TTTCTTTTTT TCTTCCAAAA AATTCAGACG GAGGAGGCAA 
1200
AAGAGTCAGG TACGGAGCTC AAGGCAAGGG CCTCATCTTG GATTAGGTTG 
1250
CGAGGTGCTA GATAAGACTG ATGATGCTCA TTCTGTTAGA AGTGAGAAGA 
1300
GCCGAATACC ACCTGGAAAG CATTACGAAA GAATTGGGGG TGCTGAGTCT 
1350
GGTCAAAGAG TTCCTCCTGG CACGAGTCCT GCAGACGTGC AATCATGTGG 
1400
GGATCCAGAT TATGTGCAGT CGATAGCTGG AAGTACAATG TTGCAGTTTG 
1450
CAAAAACGAG GAAAATATCT ATAGAACGGT CGGACTTGAG GAACCGAAGC 
1500
CTCCTTCAGA AGAGACAGTT CTTCCACTCT CATCGAGCTC AGCCCATGGC 
1550
TCTAGAACAA GTACTTTCGG ACCGGGATAG TGAAGATGAA GTTGATGATG 
1600
ATGTGGCAGA TTTTGAAGAT AGAAGGATGC TCGATGATTT CGTTGATGTG 
1650
ACTAAAGATG AGAAACAGAT GATGCACATG TGGAACTCGT TTGTGAGGAA 
1700
GCAGCGAGTA TTAGCAGATG GTCACATTCC ATGGGCATGC GAGGCATTCT 
1750
CAAGATTGCA CGGACCCATC ATGGTTCGAA CACCGCACTT GATTTGGTGC 
1800
TGGAGAGTGT TTATGGTGAA ACTGTGGAAC CACGGTCTTC TTGATGCCCG 
1850
AACCATGAAC AACTGTAATA CCTTTCTCGA ACAGCTCCAA ATTTGA
1900

>AT5G51230.1 longest ORF length:631
MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE 
50
LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK 
100
LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL 
150
PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK 
200
IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV 
250
PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR 
300
TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL 
350
NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ 
400
KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES 
450
GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS 
500
LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV 
550
TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC 
600
WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I
650