fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G51590 AT hook motif DNA-binding family protein (.1)

>AT5G51590.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 947
EcoRI G|AATTC 213, 1216
HindIII A|AGCTT 965
NcoI C|CATGG 1104
StyI C|C[AT][AT]GG 1104


Click here to view TAIR data

>AT5G51590.1 length:1260
ATGGAGGAGA GAGAAGGAAC TAACATCAAC AACATCCCAA CCAGTTTTGG 
50
TCTGAAACAA CATGAAACTC CTCTTCCTCC TCCTGGTTAC CCACCACGGT 
100
CTGAAAACCC TAATCTTTTT CCGGTGGGTC AATCCAGCAC TTCCTCCGCC 
150
GCCGCCGCGG TGAAACCTTC TGAGAATGTT GCTCCTCCTT TTAGCTTAAC 
200
AATGCCGGTG GAGAATTCTT CTTCTGAGTT GAAGAAGAAG AGAGGGAGAC 
250
CAAGAAAGTA TAACCCTGAC GGCTCACTCG CTGTGACTCT CTCTCCTATG 
300
CCTATCTCAT CCTCCGTTCC GTTGACGTCG GAGTTTGGTT CTCGGAAACG 
350
AGGAAGAGGT CGAGGAAGAG GCAGAGGAAG AGGACGAGGA CGTGGACAAG 
400
GACAAGGAAG CAGAGAGCCC AATAACAACA ACAACGACAA CAATTGGCTC 
450
AAGAATCCTC AGATGTTCGA ATTTAACAAC AACACTCCTA CTTCTGGTGG 
500
AGGAGGACCT GCTGAAATTG TCAGTCCAAG TTTTACACCT CATGTGCTCA 
550
CAGTAAATGC CGGTGAGGAT GTGACAATGA AGATAATGAC ATTCTCTCAA 
600
CAAGGCTCGC GTGCTATTTG TATTCTTTCA GCGAACGGTC CCATATCCAA 
650
TGTTACACTT CGTCAATCTA TGACATCTGG TGGTACTCTC ACTTATGAGG 
700
GTCATTTTGA GATTCTTTCT TTGACGGGTT CGTTTATACC AAGCGAGAGT 
750
GGAGGAACCC GAAGCAGAGC TGGTGGGATG AGTGTCTCTC TTGCAGGACA 
800
AGATGGTCGT GTCTTTGGTG GTGGACTTGC TGGTCTCTTT ATTGCCGCTG 
850
GTCCTGTTCA GGTAATGGTA GGGAGTTTTA TAGCGGGTCA GGAGGAATCG 
900
CAGCAGCAGC AGCAGCAGAT AAAGAAGCAA AGAAGGGAAA GACTCGGGAT 
950
CCCGACAACA ACACAAGCTT CTAATATCTC ATTCGGTGGC TCAGCGGAAG 
1000
ATCCTAAGGC TAGATACGGG CTCAACAAGC CTGTTGTTAT TCAGCCACCA 
1050
CCGGTGTCTG CACCACCTGT GTCCTTTTCG CATGAACCAA GTACTAACAC 
1100
CGTCCATGGT TACTATGCAA ATAACACAGC TAACCATATC AAGGATCTCT 
1150
TCTCTTCCCT CCCTGGAGAA GATAGGGAAG AAGATGAGGA TGATTTAGAA 
1200
GGTGAAGATG ATGAAGAATT CGGAGGCCAT AGCGAATCTG ACACCGAGGT 
1250
TCCAAGCTGA 
1300

>AT5G51590.1 longest ORF length:419
MEEREGTNIN NIPTSFGLKQ HETPLPPPGY PPRSENPNLF PVGQSSTSSA 
50
AAAVKPSENV APPFSLTMPV ENSSSELKKK RGRPRKYNPD GSLAVTLSPM 
100
PISSSVPLTS EFGSRKRGRG RGRGRGRGRG RGQGQGSREP NNNNNDNNWL 
150
KNPQMFEFNN NTPTSGGGGP AEIVSPSFTP HVLTVNAGED VTMKIMTFSQ 
200
QGSRAICILS ANGPISNVTL RQSMTSGGTL TYEGHFEILS LTGSFIPSES 
250
GGTRSRAGGM SVSLAGQDGR VFGGGLAGLF IAAGPVQVMV GSFIAGQEES 
300
QQQQQQIKKQ RRERLGIPTT TQASNISFGG SAEDPKARYG LNKPVVIQPP 
350
PVSAPPVSFS HEPSTNTVHG YYANNTANHI KDLFSSLPGE DREEDEDDLE 
400
GEDDEEFGGH SESDTEVPS
450