Locus |
Common name |
Short description |
AT5G51790 |
bHLH120 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT5G51790.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, StyI, XbaI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
325, 331 |
BglII
| A|GATCT |
264 |
HindIII
| A|AGCTT |
82 |
NdeI
| CA|TATG |
43 |
SpeI
| A|CTAGT |
313 |
XhoI
| C|TCGAG |
430 |
Click here to view TAIR data
>AT5G51790.1 length:630
ATGAATCCTT CTAACAATCC TAAAAAGACA AGGCACCAGA GTCATATGCC | 50 |
TCAAGAAAGA GATGAAACGA AGAAGGAGAA GAAGCTTCTC CACCGCAACA | 100 |
TCGAACGACA AAGAAGACAA GAAATGGCGA TCCTTTTCGC CTCTCTTCGT | 150 |
AGTCAGCTAC CTCTAAAATA CATCAAGGCT CTTTCTTCGC AGGGAAAGAG | 200 |
AGCCATGTCA GATCATGTAA ACGGAGCAGT AAGTTTCATC AAAGACACGC | 250 |
AAACAAGGAT AAAAGATCTC TCCGCAAGAA GAGACGAGCT AAAGCGAGAG | 300 |
ATTGGTGACC CTACTAGTCT AACTGGATCC GGATCCGGAT CTGGATCAAG | 350 |
TAGATCGGAA CCAGCTAGTG TCATGGTGCA ACCGTGTGTG AGCGGCTTCG | 400 |
AGGTGGTTGT GAGCAGCTTA GCATCAGGTC TCGAGGCTTG GCCACTCTCA | 450 |
AGAGTTCTTG AAGTTCTTCA CGGGCAAGGA CTTGAAGTCA TCAGCTCTTT | 500 |
AACAGCACGA GTCAACGAGA GGCTCATGTA CACTATACAA GTCGAGGTAA | 550 |
ATAGCTTTGA TTGCTTCGAC TTAGCTTGGT TGCAGCAGAA GCTAATTGAG | 600 |
CAGTTAGTAC TTTCCACGAC TAGGCACTGA | 650 |
>AT5G51790.1 longest ORF length:209
MNPSNNPKKT RHQSHMPQER DETKKEKKLL HRNIERQRRQ EMAILFASLR | 50 |
SQLPLKYIKA LSSQGKRAMS DHVNGAVSFI KDTQTRIKDL SARRDELKRE | 100 |
IGDPTSLTGS GSGSGSSRSE PASVMVQPCV SGFEVVVSSL ASGLEAWPLS | 150 |
RVLEVLHGQG LEVISSLTAR VNERLMYTIQ VEVNSFDCFD LAWLQQKLIE | 200 |
QLVLSTTRH | 250 |
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