Locus |
Common name |
Short description |
AT5G51910 |
TCP19 |
TCP family transcription factor (.1.2) |
>AT5G51910.2 CDS map
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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, , NarI, NcoI, NdeI, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, XbaI, XcmI, XhoI, XmaI, XmnI
Name |
Recognition sequence |
Cut positions |
AccI
| GT|[AC][TG]AC |
484 |
AccII(FnuDII)
| CG|CG |
22 |
AciI
| C|CGC |
782 |
AclI
| AA|CGTT |
568 |
AgeI
| A|CCGGT |
708 |
AluI
| AG|CT |
307, 395, 497, 506, 526, 679, 822 |
AlwNI
| CAGNNN|CTG |
740 |
AvaI
| C|PyCGPuG |
236 |
BamHI
| G|GATCC |
209 |
BanII
| GPuGCPy|C |
396 |
BfaI
| C|TAG |
702, 714 |
BglI
| GCCNNNN|NGGC |
596 |
BsaHI
| GPu|CGPyC |
540 |
BsaWI
| [AT]|CCGG[AT] |
334, 340, 708 |
BsiEI
| CGPuPy|CG |
420 |
BsiHKAI
| G[AT]GC[AT]|C |
396 |
BslI
| CCNNNNN|NNGG |
218, 656 |
BsmI
| GAATGCN| |
216 |
BsoBI
| C|PyCGPuG |
236 |
Bsp1286I
| G[GAT]GC[CAT]|C |
396 |
BspHI
| T|CATGA |
104, 870 |
BsrBI
| GAG|CGG |
762 |
BsrFI
| Pu|CCGGPy |
132, 147, 219, 315, 351, 708 |
BsrI
| ACTGGN| |
628 |
BssKI
| |CCNGG |
90 |
BstEII
| G|GTNACC |
437 |
BstUI
| CG|CG |
22 |
BstYI
| Pu|GATCPy |
209 |
Cac8I
| GCN|NGC |
219 |
Cfr10I
| [AG]|CCGG[TC] |
132, 147, 219, 315, 351, 708 |
DdeI
| C|TNAG |
742, 786, 842 |
DpnI
| GA-CH3|TC |
208, 638 |
DpnII
| |GATC |
208, 638 |
DraI
| TTT|AAA |
381 |
DrdI
| GACNNNN|NNGTC |
63 |
EaeI
| Py|GGCCPu |
420 |
EagI
| C|GGCCG |
420 |
Fnu4HI
| GC|NGC |
128, 231, 418 |
HaeIII
| GG|CC |
419, 597, 633, 647 |
HhaI
| GCG|C |
228 |
HinP1I
| G|CGC |
228 |
HincII
| GTPy|PuAC |
370 |
HinfI
| G|ANTC |
3, 8, 74 |
HpaI
| GTT|AAC |
370 |
HpaII
| C|CGG |
89, 131, 146, 218, 314, 333, 339, 350, 635, 707 |
Hpy188I
| TCN|GA |
66, 77, 152, 203, 211, 273, 530, 689, 735 |
Hpy99I
| CG[AT]CG| |
275, 391, 775 |
HpyCH4III
| ACN|GT |
175, 290, 345, 427, 433, 466, 669 |
HpyCH4IV
| A|CGT |
486, 567 |
HpyCH4V
| TG|CA |
126 |
MboI
| |GATC |
208, 638 |
MfeI
| C|AATTG |
247 |
MseI
| T|TAA |
369, 380, 489, 555, 570, 877 |
MspA1I
| C[AC]G|C[GT]G |
498, 784 |
MspI
| C|CGG |
89, 131, 146, 218, 314, 333, 339, 350, 635, 707 |
MwoI
| GCNNNNN|NNGC |
228, 315, 505, 596, 738 |
NaeI
| GCC|GGC |
219 |
NciI
| CC|[CG]GG |
90 |
NgoMIV
| G|CCGGC |
219 |
NlaIII
| CATG| |
52, 103, 864, 869 |
NlaIV
| GGN|NCC |
150, 209, 337 |
PflFI
| GACN|NNGTC |
200 |
PshAI
| GACNN|NNGTC |
500, 711 |
PvuII
| CAG|CTG |
498 |
RsaI
| GT|AC |
347, 468, 612 |
SacI
| GAGCT|C |
396 |
Sau3AI
| |GATC |
208, 638 |
Sau96I
| G|GNCC |
633, 647 |
ScrFI
| CC|NGG |
90 |
SfcI
| C|TPuPyAG |
677 |
Taqƒ¿I
| T|CGA |
5 |
TfiI
| G|A[AT]TC |
3, 8, 74 |
TseI
| G|C[AT]GC |
128, 231 |
Tsp45I
| |GT[CG]AC |
178, 265, 424, 430, 436 |
Tsp509I
| |AATT |
246, 322 |
TspRI
| NNCA[CG]TGNN| |
405 |
Tth111I
| GACN|NNGTC |
200 |
Click here to view TAIR data
>AT5G51910.2 length:882
ATGGAATCGA ATCACGAAGG CAACGCGATA CAAGTGATTG ACCAAGTAAC | 50 |
AACCATGACC CATCTGTCTG ACCCGAATCC GAAAACCAAA CCGGGTATGA | 100 |
TGCTCATGAA ACAAGAAGAC GGGTATTTGC AGCCGGTGAA GACTAAACCG | 150 |
GCTCCGAAGA GACCGACTTC TAAAGACCGT CACACGAAAG TAGAAGGACG | 200 |
AGGTCGGAGG ATCCGAATGC CGGCGGGTTG CGCTGCTCGG GTCTTTCAAT | 250 |
TGACCCGTGA ACTTGGTCAC AAATCCGACG GAGAAACGAT ACGGTGGTTA | 300 |
TTGGAACGAG CTGAACCGGC GATAATTGAA GCAACCGGAA CCGGAACTGT | 350 |
ACCGGCTATT GCTGTATCGG TTAACGGAAC TTTAAAAATC CCGACGAGCT | 400 |
CTCCAGTGTT GAATGACGGC GGCCGTGACG GTGACGGTGA CCTAATAAAG | 450 |
AAACGGAGGA AGAGAAACTG TACGAGCGAT TTCGTAGACG TTAATGACAG | 500 |
CTGTCATAGC TCCGTTACTT CTGGGTTAGC TCCGATAACG GCGTCAAACT | 550 |
ACGGCGTTAA TATCCTGAAC GTTAATACAC AGGGGTTTGT GCCGTTTTGG | 600 |
CCTATGGGTA TGGGTACTGC GTTTGTTACT GGTGGGCCGG ATCAAATGGG | 650 |
CCAAATGTGG GCTATTCCTA CCGTTGCTAC AGCTCCGTTT CTGAATGTTG | 700 |
GTGCTAGACC GGTGTCTAGT TATGTCTCAA ACGCTTCAGA CGCTGAGGCG | 750 |
GAGATGGAAA CGAGCGGTGG CGGAACGACG CAACCGCTGA GGGATTTTTC | 800 |
GTTGGAGATT TATGATAAGA GAGAGCTTCA GTTTTTGGGT GGCTCAGGGA | 850 |
ACTCATCTCC GTCTTCATGT CATGAGACTT AA | 900 |
>AT5G51910.2 longest ORF length:293
MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP | 50 |
APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL | 100 |
LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK | 150 |
KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW | 200 |
PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA | 250 |
EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET | 300 |
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