fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G51910 TCP19 TCP family transcription factor (.1.2)

>AT5G51910.2 CDS map

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Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AfeI, AflII, AflIII, AhdI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstF5I, BstNI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, N.BstNBI, , NarI, NcoI, NdeI, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PsiI, PspGI, PspOMI, PstI, PvuI, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 484
AccII(FnuDII) CG|CG 22
AciI C|CGC 782
AclI AA|CGTT 568
AgeI A|CCGGT 708
AluI AG|CT 307, 395, 497, 506, 526, 679, 822
AlwNI CAGNNN|CTG 740
AvaI C|PyCGPuG 236
BamHI G|GATCC 209
BanII GPuGCPy|C 396
BfaI C|TAG 702, 714
BglI GCCNNNN|NGGC 596
BsaHI GPu|CGPyC 540
BsaWI [AT]|CCGG[AT] 334, 340, 708
BsiEI CGPuPy|CG 420
BsiHKAI G[AT]GC[AT]|C 396
BslI CCNNNNN|NNGG 218, 656
BsmI GAATGCN| 216
BsoBI C|PyCGPuG 236
Bsp1286I G[GAT]GC[CAT]|C 396
BspHI T|CATGA 104, 870
BsrBI GAG|CGG 762
BsrFI Pu|CCGGPy 132, 147, 219, 315, 351, 708
BsrI ACTGGN| 628
BssKI |CCNGG 90
BstEII G|GTNACC 437
BstUI CG|CG 22
BstYI Pu|GATCPy 209
Cac8I GCN|NGC 219
Cfr10I [AG]|CCGG[TC] 132, 147, 219, 315, 351, 708
DdeI C|TNAG 742, 786, 842
DpnI GA-CH3|TC 208, 638
DpnII |GATC 208, 638
DraI TTT|AAA 381
DrdI GACNNNN|NNGTC 63
EaeI Py|GGCCPu 420
EagI C|GGCCG 420
Fnu4HI GC|NGC 128, 231, 418
HaeIII GG|CC 419, 597, 633, 647
HhaI GCG|C 228
HinP1I G|CGC 228
HincII GTPy|PuAC 370
HinfI G|ANTC 3, 8, 74
HpaI GTT|AAC 370
HpaII C|CGG 89, 131, 146, 218, 314, 333, 339, 350, 635, 707
Hpy188I TCN|GA 66, 77, 152, 203, 211, 273, 530, 689, 735
Hpy99I CG[AT]CG| 275, 391, 775
HpyCH4III ACN|GT 175, 290, 345, 427, 433, 466, 669
HpyCH4IV A|CGT 486, 567
HpyCH4V TG|CA 126
MboI |GATC 208, 638
MfeI C|AATTG 247
MseI T|TAA 369, 380, 489, 555, 570, 877
MspA1I C[AC]G|C[GT]G 498, 784
MspI C|CGG 89, 131, 146, 218, 314, 333, 339, 350, 635, 707
MwoI GCNNNNN|NNGC 228, 315, 505, 596, 738
NaeI GCC|GGC 219
NciI CC|[CG]GG 90
NgoMIV G|CCGGC 219
NlaIII CATG| 52, 103, 864, 869
NlaIV GGN|NCC 150, 209, 337
PflFI GACN|NNGTC 200
PshAI GACNN|NNGTC 500, 711
PvuII CAG|CTG 498
RsaI GT|AC 347, 468, 612
SacI GAGCT|C 396
Sau3AI |GATC 208, 638
Sau96I G|GNCC 633, 647
ScrFI CC|NGG 90
SfcI C|TPuPyAG 677
Taqƒ¿I T|CGA 5
TfiI G|A[AT]TC 3, 8, 74
TseI G|C[AT]GC 128, 231
Tsp45I |GT[CG]AC 178, 265, 424, 430, 436
Tsp509I |AATT 246, 322
TspRI NNCA[CG]TGNN| 405
Tth111I GACN|NNGTC 200


Click here to view TAIR data

>AT5G51910.2 length:882
ATGGAATCGA ATCACGAAGG CAACGCGATA CAAGTGATTG ACCAAGTAAC 
50
AACCATGACC CATCTGTCTG ACCCGAATCC GAAAACCAAA CCGGGTATGA 
100
TGCTCATGAA ACAAGAAGAC GGGTATTTGC AGCCGGTGAA GACTAAACCG 
150
GCTCCGAAGA GACCGACTTC TAAAGACCGT CACACGAAAG TAGAAGGACG 
200
AGGTCGGAGG ATCCGAATGC CGGCGGGTTG CGCTGCTCGG GTCTTTCAAT 
250
TGACCCGTGA ACTTGGTCAC AAATCCGACG GAGAAACGAT ACGGTGGTTA 
300
TTGGAACGAG CTGAACCGGC GATAATTGAA GCAACCGGAA CCGGAACTGT 
350
ACCGGCTATT GCTGTATCGG TTAACGGAAC TTTAAAAATC CCGACGAGCT 
400
CTCCAGTGTT GAATGACGGC GGCCGTGACG GTGACGGTGA CCTAATAAAG 
450
AAACGGAGGA AGAGAAACTG TACGAGCGAT TTCGTAGACG TTAATGACAG 
500
CTGTCATAGC TCCGTTACTT CTGGGTTAGC TCCGATAACG GCGTCAAACT 
550
ACGGCGTTAA TATCCTGAAC GTTAATACAC AGGGGTTTGT GCCGTTTTGG 
600
CCTATGGGTA TGGGTACTGC GTTTGTTACT GGTGGGCCGG ATCAAATGGG 
650
CCAAATGTGG GCTATTCCTA CCGTTGCTAC AGCTCCGTTT CTGAATGTTG 
700
GTGCTAGACC GGTGTCTAGT TATGTCTCAA ACGCTTCAGA CGCTGAGGCG 
750
GAGATGGAAA CGAGCGGTGG CGGAACGACG CAACCGCTGA GGGATTTTTC 
800
GTTGGAGATT TATGATAAGA GAGAGCTTCA GTTTTTGGGT GGCTCAGGGA 
850
ACTCATCTCC GTCTTCATGT CATGAGACTT AA
900

>AT5G51910.2 longest ORF length:293
MESNHEGNAI QVIDQVTTMT HLSDPNPKTK PGMMLMKQED GYLQPVKTKP 
50
APKRPTSKDR HTKVEGRGRR IRMPAGCAAR VFQLTRELGH KSDGETIRWL 
100
LERAEPAIIE ATGTGTVPAI AVSVNGTLKI PTSSPVLNDG GRDGDGDLIK 
150
KRRKRNCTSD FVDVNDSCHS SVTSGLAPIT ASNYGVNILN VNTQGFVPFW 
200
PMGMGTAFVT GGPDQMGQMW AIPTVATAPF LNVGARPVSS YVSNASDAEA 
250
EMETSGGGTT QPLRDFSLEI YDKRELQFLG GSGNSSPSSC HET
300