fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G52010 C2H2-like zinc finger protein (.1)

>AT5G52010.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 559
HindIII A|AGCTT 111
StyI C|C[AT][AT]GG 916, 976


Click here to view TAIR data

>AT5G52010.1 length:1191
ATGAGTTTGT TCTGTAATTC AATCGAAACC CTTTATCCAA AACCATTCCT 
50
TTCACACAAA TCTCACTTCT TTACCTTCTC CAATTCCAAA TTCCAAAACC 
100
CTAAATTCAC AAGCTTCCCA CTTCGTCACC AATGGCGGAT CGAATCATGT 
150
CTGAAATCAG CATCTTCATC AGAAATCGAT ATGGTAAGAA ACAAAGAAGG 
200
TATCTTTGCA CCAAAGGAGA AGAAAGTTGT AGTCTTATGG GACTTAGACA 
250
ACAAACCACC ACGAGGTCCA CCATACGAAG CCGCAACAGC TCTCCGTAAA 
300
GTCGCTGAGA AACTCGGCCG AGTCGTCGAA ATCTCCGCTT ACGCAAATCG 
350
TCATGCTTTT ATCCATTTAC CTCATTGGGT CGTCGAAGAG AGACGAGAAA 
400
GGAGGAACCT TGATTTCATG GAGAGGAAAG GAGAAGTGAC TCCAATTGAT 
450
CCGTACATTT GTGGTGTTTG TGGTCGCAAG TGTAAAACCA ATCTTGATTT 
500
GAAGAAACAT TTCAAGCAGC TTCATGAGAG GGAGAGACAG AAGAAAGTTA 
550
ATAGGATGAG ATCTTTGAAA GGTAAGAAAC GTCAGAAGTT TAAGGAGCGT 
600
TATGTTTCAG GGAATGAGAA GTATAATGAG GCTGCGAGGA GTTTGTTGAC 
650
TCCTAAAGTT GGATATGGTT TAGAGGCTGA GCTACGTCGA GCAGGGGTTT 
700
ATGTTAAGAC GGTTGAGGAT AAGCCTCAGG CTGCGGATTG GGCGGTTAAG 
750
AGACAGATAC AACATTCAAT GACTAGAGGG ATTGATTGGT TGGTTTTGGT 
800
GTCGGATGAT AAGGATTTTT CTGATATGTT GAGGAAAGCT AGAGAGGCTG 
850
ATCTTGGGAC TTTGGTTGTT AGTGATATGG ATAGAGCATT GGGAAGGCAT 
900
GCTGATTTGT GGGTGCCTTG GAGTGGTGTT GAGAAGGGAG AGATTGGTGA 
950
GAAGGATTTG ATTCCGGGGA AGAGACCAAG GTTTGAGGAG GATGAGGTGG 
1000
GATTTGGTGG TAATGATGAG TTGTTTTCGT TGTCGTATGA TGAGGATGAG 
1050
AAGGCGGAGA TGACGGTGGA GAGTGATGGG TTTGGGAGGT TTAATGTATC 
1100
GGCGTTTTCG GAAGATGAAT GGGTGGAGGA TGAAGGAGAC TTTGTGTTGA 
1150
GTGATAGTAG TGATGATGAT AGTGATGATG AGCTTTTCTG A
1200

>AT5G52010.1 longest ORF length:396
MSLFCNSIET LYPKPFLSHK SHFFTFSNSK FQNPKFTSFP LRHQWRIESC 
50
LKSASSSEID MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK 
100
VAEKLGRVVE ISAYANRHAF IHLPHWVVEE RRERRNLDFM ERKGEVTPID 
150
PYICGVCGRK CKTNLDLKKH FKQLHERERQ KKVNRMRSLK GKKRQKFKER 
200
YVSGNEKYNE AARSLLTPKV GYGLEAELRR AGVYVKTVED KPQAADWAVK 
250
RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDMDRALGRH 
300
ADLWVPWSGV EKGEIGEKDL IPGKRPRFEE DEVGFGGNDE LFSLSYDEDE 
350
KAEMTVESDG FGRFNVSAFS EDEWVEDEGD FVLSDSSDDD SDDELF
400