fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G52020 Integrase-type DNA-binding superfamily protein (.1)

>AT5G52020.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, StyI, XbaI, XhoI
Name Recognition sequence Cut positions
KpnI GGTAC|C 282


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>AT5G52020.1 length:699
ATGTCGAATA ATAATAATTC TCCGACCACC GTGAATCAAG AAACGACGAC 
50
GTCTCGTGAA GTCTCAATCA CATTGCCTAC TGATCAATCT CCTCAAACCT 
100
CACCAGGATC ATCTTCTTCT CCTTCACCGA GACCTTCCGG TGGATCACCG 
150
GCGAGAAGAA CGGCGACTGG ATTATCCGGC AAGCACTCTA TTTTCAGGGG 
200
GATTCGACTA CGTAACGGAA AATGGGTATC GGAGATTAGA GAGCCACGTA 
250
AAACGACAAG AATTTGGCTC GGGACTTATC CGGTACCGGA GATGGCTGCC 
300
GCCGCTTACG ACGTGGCTGC GTTAGCTTTA AAAGGACCCG ACGCCGTTTT 
350
GAATTTTCCT GGTTTAGCTT TGACTTACGT GGCTCCGGTT TCAAACTCTG 
400
CTGCGGATAT AAGAGCGGCT GCTAGTAGAG CAGCGGAGAT GAAGCAACCG 
450
GATCAGGGTG GGGATGAGAA GGTATTGGAA CCGGTTCAAC CCGGCAAAGA 
500
GGAAGAATTA GAAGAAGTGT CGTGTAACTC GTGTTCGTTG GAGTTTATGG 
550
ATGAGGAAGC GATGTTGAAT ATGCCGACTT TGTTGACGGA GATGGCTGAA 
600
GGGATGTTGA TGAGTCCACC GAGAATGATG ATACATCCGA CGATGGAAGA 
650
TGATTCGCCG GAGAATCATG AAGGAGATAA TCTTTGGAGT TATAAATGA
700

>AT5G52020.1 longest ORF length:232
MSNNNNSPTT VNQETTTSRE VSITLPTDQS PQTSPGSSSS PSPRPSGGSP 
50
ARRTATGLSG KHSIFRGIRL RNGKWVSEIR EPRKTTRIWL GTYPVPEMAA 
100
AAYDVAALAL KGPDAVLNFP GLALTYVAPV SNSAADIRAA ASRAAEMKQP 
150
DQGGDEKVLE PVQPGKEEEL EEVSCNSCSL EFMDEEAMLN MPTLLTEMAE 
200
GMLMSPPRMM IHPTMEDDSP ENHEGDNLWS YK
250