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| Locus | Common name | Short description |
| AT5G52170 | HDG7 | homeodomain GLABROUS 7 (.1) |
>AT5G52170.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccIII(BspMII), AclI, AflIII, AgeI, AlwI, AlwNI, ApaI, ApoI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaWI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrFI, BsrGI, BssHII, BssSI, BstBI, BstEII, Bsu36I, BtrI, BtsI, Cfr10I, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeIII, HgaI, HpaII, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, MspI, NaeI, , NarI, NciI, NdeI, NgoMIV, NlaIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 1337, 2036 |
| AccII(FnuDII) | CG|CG | 865, 1744 |
| AciI | C|CGC | 2025 |
| AfeI | AGC|GCT | 1492 |
| AflII | C|TTAAG | 517 |
| AhdI | GACNNN|NNGTC | 634 |
| AluI | AG|CT | 63, 107, 513, 525, 800, 1274, 1344, 1362, 1413, 1640, 1795 |
| Aor51HI(Eco47III) | AGC|GCT | 1492 |
| ApaLI | G|TGCAC | 1730 |
| AvaI | C|PyCGPuG | 1377 |
| BclI | T|GATCA | 1674, 1860 |
| BfaI | C|TAG | 27, 344, 395, 809, 1346 |
| BglII | A|GATCT | 1931 |
| BlpI | GC|TNAGC | 512 |
| BsaBI | GATNN|NNATC | 41, 1848 |
| BsaJI | C|CNNGG | 674, 683, 765, 1145 |
| BsiEI | CGPuPy|CG | 1031 |
| BsiHKAI | G[AT]GC[AT]|C | 1730 |
| BslI | CCNNNNN|NNGG | 594 |
| BsmI | GAATGCN| | 508 |
| BsoBI | C|PyCGPuG | 1377 |
| Bsp1286I | G[GAT]GC[CAT]|C | 1730 |
| BspDI | AT|CGAT | 750 |
| BsrBI | GAG|CGG | 349, 1782 |
| BsrDI | GCAATGNN| | 120, 1268 |
| BsrI | ACTGGN| | 781, 1734 |
| BssKI | |CCNGG | 465, 765 |
| BstAPI | GCANNNN|NTGC | 1138 |
| BstF5I | GGATGNN| | 688, 1112, 1907 |
| BstNI | CC|[AT]GG | 465, 765 |
| BstUI | CG|CG | 865, 1744 |
| BstXI | CCANNNNN|NTGG | 765 |
| BstYI | Pu|GATCPy | 666, 1931 |
| BstZ17I | GTA|TAC | 1337, 2036 |
| BtgI | C|CPuPyGG | 674, 683 |
| Cac8I | GCN|NGC | 939, 1004, 1248, 1347, 2002 |
| ClaI | AT|CGAT | 750 |
| DdeI | C|TNAG | 154, 495, 511, 993, 1212, 1423, 1488, 1522, 1934, 2044 |
| DpnI | GA-CH3|TC | 8, 90, 665, 747, 909, 1301, 1673, 1842, 1859, 1930, 2017 |
| DpnII | |GATC | 8, 90, 665, 747, 909, 1301, 1673, 1842, 1859, 1930, 2017 |
| EcoRV | GAT|ATC | 891 |
| Fnu4HI | GC|NGC | 350, 392, 485, 584, 1138, 1352, 1494, 1642, 1662, 2025 |
| HaeII | PuGCGC|Py | 1492, 1806 |
| HhaI | GCG|C | 1233, 1349, 1491, 1745, 1805 |
| HinP1I | G|CGC | 1233, 1349, 1491, 1745, 1805 |
| HincII | GTPy|PuAC | 1987 |
| HindIII | A|AGCTT | 64, 514, 1414 |
| HinfI | G|ANTC | 203, 216, 365, 417, 556, 818, 1181, 1253, 1463, 1520, 1531, 1791, 1889, 1971 |
| HpaI | GTT|AAC | 1987 |
| Hpy188I | TCN|GA | 314, 1167, 1296, 1857, 1928, 2020 |
| Hpy99I | CG[AT]CG| | 1034 |
| HpyCH4III | ACN|GT | 403, 898, 1205, 1773, 1917, 1983 |
| HpyCH4IV | A|CGT | 1428, 1719, 1965 |
| HpyCH4V | TG|CA | 115, 857, 871, 936, 1001, 1112, 1257, 1394, 1559, 1701, 1729, 1954, 2003 |
| MboI | |GATC | 8, 90, 665, 747, 909, 1301, 1673, 1842, 1859, 1930, 2017 |
| MseI | T|TAA | 66, 300, 411, 516, 1986 |
| MslI | CAPyNN|NNPuTG | 245, 359, 1016, 1506 |
| MwoI | GCNNNNN|NNGC | 347, 678, 1138, 1352, 1700, 1803 |
| N.BstNBI | GAGTCNNNN|N | 422, 1186, 1468 |
| NcoI | C|CATGG | 674, 683 |
| NheI | G|CTAGC | 1347 |
| NlaIII | CATG| | 353, 673, 682, 1010, 1152, 1319, 1710 |
| NsiI | ATGCA|T | 1113 |
| NspI | PuCATG|Py | 1320 |
| PspGI | |CC[AT]GG | 465, 765 |
| PstI | CTGCA|G | 1258 |
| RsaI | GT|AC | 788, 1171 |
| Sau3AI | |GATC | 8, 90, 665, 747, 909, 1301, 1673, 1842, 1859, 1930, 2017 |
| ScaI | AGT|ACT | 789 |
| ScrFI | CC|NGG | 465, 765 |
| SexAI | A|CC[AT]GGT | 466 |
| SfcI | C|TPuPyAG | 623, 1258, 1919 |
| SmlI | C|TPyPuAG | 517, 580, 1468 |
| StyI | C|C[AT][AT]GG | 674, 683, 1145 |
| Taqƒ¿I | T|CGA | 213, 749, 813, 1035, 1826, 1866 |
| TfiI | G|A[AT]TC | 203, 216, 365, 556, 1791, 1889, 1971 |
| TseI | G|C[AT]GC | 485, 584, 1138, 1352, 1494, 1642, 1662 |
| Tsp45I | |GT[CG]AC | 1149, 1183, 1316, 1518 |
| Tsp509I | |AATT | 298, 708 |
| TspRI | NNCA[CG]TGNN| | 640, 654, 1518, 1571, 1734 |
| XbaI | T|CTAGA | 28 |
| XcmI | CCANNNNN|NNNNTGG | 683 |
| XmnI | GAANN|NNTTC | 760 |
Click here to view TAIR data
>AT5G52170.1 length:2049
ATGAATGGCG ATCTTGAAGT TGATATGTCT AGAGGAGATT TCAATCCAAG | 50 |
TTTTTTTCTT GGAAAGCTTA AAGACGATGA GTTTGAGAGT AGATCATTGA | 100 |
GTGATGATAG CTTTGATGCA ATGTCTGGTG ATGAGGATAA ACAAGAACAA | 150 |
CGCCCTAAGA AGAAGAAGAG GAAGACAAAG TATCATAGAC ACACTTCTTA | 200 |
CCAGATTCAA GAACTCGAAT CTTTCTTCAA AGAGTGTCCT CATCCTAATG | 250 |
AGAAGCAAAG GTTGGAACTT GGCAAAAAAC TTACTTTGGA GAGTAAGCAA | 300 |
ATTAAGTTTT GGTTTCAGAA CAGAAGAACA CAAATGAAGA CGCAACTAGA | 350 |
GCGGCATGAG AATGTGATTC TCAAACAAGA GAATGAAAAA CTGCGGCTAG | 400 |
AAAACAGTTT CCTTAAAGAG TCAATGAGAG GCTCTCTATG TATTGATTGT | 450 |
GGTGGAGCAG TTATACCTGG TGAGGTTTCT TTTGAGCAGC ACCAACTTAG | 500 |
GATTGAGAAT GCTAAGCTTA AGGAAGAGCT TGATAGGATT TGTGCTTTAG | 550 |
CAAATAGATT CATTGGTGGG TCTATTTCAC TTGAGCAGCC TTCAAATGGT | 600 |
GGGATTGGCT CACAGCATTT GCCTATAGGA CATTGTGTCA GTGGTGGAAC | 650 |
TTCACTGATG TTTATGGATC TTGCCATGGA AGCCATGGAT GAGTTGTTGA | 700 |
AGTTAGCAGA ATTGGAAACT TCTTTATGGA GTTCAAAGAG TGAGAAAGGA | 750 |
TCGATGAACC ATTTCCCTGG TTCAAGAGAA ACTGGTTTAG TACTTATCAA | 800 |
TAGCTTGGCT CTAGTCGAGA CTCTTATGGA CACGAACAAA TGGGCAGAAA | 850 |
TGTTTGAGTG CATAGTCGCG GTTGCATCAA CCCTTGAAGT GATATCCAAC | 900 |
GGTAGTGATG GATCAAGAAA CGGCTCTATT CTATTGATGC AAGCAGAGTT | 950 |
TCAAGTGATG TCTCCATTAG TTCCAATCAA ACAAAAGAAG TTTCTTAGAT | 1000 |
ATTGCAAGCA ACATGGAGAT GGTTTATGGG CGGTCGTCGA TGTTTCTTAT | 1050 |
GATATAAACA GAGGAAATGA GAACTTGAAG TCTTATGGTG GCTCTAAAAT | 1100 |
GTTTCCTTCA GGATGCATTA TACAAGACAT AGGCAACGGC TGCTCCAAGG | 1150 |
TGACATGGAT AGAACATTCA GAGTACGAAG AGAGTCACAC CCACTCACTT | 1200 |
TACCAACCGT TGCTCAGTTC TTCGGTTGGG TTAGGCGCAA CCAAATGGCT | 1250 |
TGCGACTCTG CAGAGGCAAT GCGAGAGCTT CACAATGCTT TTGTCTTCTG | 1300 |
AAGATCACAC AGGTTTGTCA CATGCTGGAA CAAAGAGTAT ACTAAAGCTA | 1350 |
GCGCAGCGTA TGAAGCTCAA CTTTTACTCG GGAATAACTG CTTCGTGCAT | 1400 |
TCACAAATGG GAGAAGCTTC TTGCTGAGAA CGTGGGACAG GACACAAGGA | 1450 |
TACTGACAAG GAAGAGTCTT GAGCCGTCTG GTATTGTCCT GAGCGCTGCG | 1500 |
ACATCTCTGT GGCTACCAGT GACTCAGCAG AGACTCTTTG AGTTTCTGTG | 1550 |
TGATGGTAAA TGCAGAAACC AGTGGGATAT TTTGTCTAAT GGTGCTTCAA | 1600 |
TGGAAAACAC ACTTCTCGTC CCAAAAGGAC AACAGGAAGG AAGCTGCGTC | 1650 |
TCTCTTCTTC GTGCTGCTGG GAATGATCAA AATGAGAGTA GTATGCTCAT | 1700 |
CTTGCAAGAG ACATGGAATG ACGTTTCTGG TGCACTGGTG GTTTACGCGC | 1750 |
CTGTTGATAT TCCATCTATG AATACTGTAA TGAGCGGTGG AGATTCAGCT | 1800 |
TATGTGGCGC TTCTTCCATC GGGGTTCTCG ATATTGCCTG ACGGATCATC | 1850 |
ATCATCGTCT GATCAGTTCG ATACCGATGG CGGTTTGGTG AATCAAGAAA | 1900 |
GCAAAGGATG TCTCCTGACT GTAGGATTTC AGATCTTAGT GAACAGCCTA | 1950 |
CCGACTGCAA AACTCAACGT GGAATCTGTT GAAACTGTTA ACAACCTCAT | 2000 |
CGCTTGCACC ATTCACAAGA TCAGAGCCGC TCTTCGTATA CCTGCTTAG | 2050 |
>AT5G52170.1 longest ORF length:682
MNGDLEVDMS RGDFNPSFFL GKLKDDEFES RSLSDDSFDA MSGDEDKQEQ | 50 |
RPKKKKRKTK YHRHTSYQIQ ELESFFKECP HPNEKQRLEL GKKLTLESKQ | 100 |
IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC | 150 |
GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG | 200 |
GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG | 250 |
SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN | 300 |
GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY | 350 |
DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL | 400 |
YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTGLS HAGTKSILKL | 450 |
AQRMKLNFYS GITASCIHKW EKLLAENVGQ DTRILTRKSL EPSGIVLSAA | 500 |
TSLWLPVTQQ RLFEFLCDGK CRNQWDILSN GASMENTLLV PKGQQEGSCV | 550 |
SLLRAAGNDQ NESSMLILQE TWNDVSGALV VYAPVDIPSM NTVMSGGDSA | 600 |
YVALLPSGFS ILPDGSSSSS DQFDTDGGLV NQESKGCLLT VGFQILVNSL | 650 |
PTAKLNVESV ETVNNLIACT IHKIRAALRI PA | 700 |