fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G53290 CRF3 cytokinin response factor 3 (.1)

>AT5G53290.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, HindIII, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 1047
EcoRV GAT|ATC 925, 1041
HpaI GTT|AAC 211, 981
NcoI C|CATGG 394, 772
StyI C|C[AT][AT]GG 394, 772


Click here to view TAIR data

>AT5G53290.1 length:1065
ATGGACGAAT ATATTGATTT CCGACCATTG AAGTACACAG AGCACAAGAC 
50
TTCAATGACT AAATACACCA AAAAGTCATC GGAAAAACTT TCCGGTGGTA 
100
AGTCATTGAA AAAGGTTAGT ATTTGTTATA CTGATCCTGA CGCAACAGAT 
150
TCATCAAGTG ACGAAGACGA AGAAGATTTC TTGTTTCCTC GCCGGAGAGT 
200
CAAAAGATTC GTTAACGAGA TCACTGTTGA GCCTAGCTGT AACAACGTCG 
250
TCACCGGAGT TTCGATGAAA GATAGAAAGA GACTCTCTTC TTCCTCCGAT 
300
GAAACTCAAT CTCCGGCGTC GAGTCGTCAA CGTCCTAATA ACAAAGTTTC 
350
AGTCTCCGGT CAGATAAAGA AGTTCCGTGG TGTTAGACAA CGGCCATGGG 
400
GGAAATGGGC GGCGGAGATT AGAGATCCGG AGCAACGTCG GAGGATTTGG 
450
CTCGGGACTT TTGAGACGGC GGAGGAAGCT GCCGTGGTTT ATGATAACGC 
500
CGCTATAAGA CTCCGTGGAC CGGACGCTTT AACTAATTTC TCCATACCGC 
550
CTCAAGAAGA GGAAGAAGAA GAAGAACCGG AACCGGTTAT TGAGGAGAAA 
600
CCGGTTATTA TGACGACGCC AACACCAACA ACATCGAGTT CTGAATCAAC 
650
TGAAGAAGAT TTACAACATC TCTCATCTCC TACTTCGGTT CTCAATCACC 
700
GGTCAGAAGA GATTCAACAA GTACAACAAC CGTTTAAATC AGCTAAACCC 
750
GAACCGGGGG TTTCAAATGC ACCATGGTGG CATACCGGGT TTAATACCGG 
800
TTTAGGTGAA TCAGACGATT CATTTCCTTT GGATACTCCG TTTCTTGACA 
850
ACTATTTCAA TGAATCACCA CCAGAGATGT CAATATTTGA CCAACCAATG 
900
GATCAAATTT TCTGTGAAAA TGATGATATC TTCAATGATA TGTTGTTCTT 
950
GGGTGGTGAA ACTATGAACA TTGAAGATGA GTTAACAAGT TCTAGTATCA 
1000
AAGATATGGG TTCAACGTTT AGTGATTTTG ATGATTCATT GATATCAGAT 
1050
CTATTAGTTG CTTAA
1100

>AT5G53290.1 longest ORF length:354
MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD 
50
SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD 
100
ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW 
150
LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK 
200
PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP 
250
EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM 
300
DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD 
350
LLVA
400