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| Locus | Common name | Short description |
| AT5G53980 | ATHB52 | homeobox protein 52 (.1) |
>AT5G53980.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BfaI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaJI, BsaWI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BslI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspEI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HpaI, HpaII, HphI, HpyCH4IV, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MseI, MslI, MspA1I, MspI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TliI, Tsp45I, XbaI, XcmI, XhoI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 137 |
| AluI | AG|CT | 93, 129, 241, 294, 315, 411 |
| ApoI | Pu|AATTPy | 6 |
| AvaII | G|G[AT]CC | 206 |
| BclI | T|GATCA | 390 |
| BglII | A|GATCT | 105 |
| BsaBI | GATNN|NNATC | 380, 450 |
| BspHI | T|CATGA | 384 |
| BsrDI | GCAATGNN| | 436 |
| BsrI | ACTGGN| | 66 |
| BssKI | |CCNGG | 181 |
| BstAPI | GCANNNN|NTGC | 275 |
| BstNI | CC|[AT]GG | 181 |
| BstYI | Pu|GATCPy | 105, 445 |
| Cac8I | GCN|NGC | 177, 318, 421 |
| DdeI | C|TNAG | 10, 193 |
| DpnI | GA-CH3|TC | 50, 104, 380, 389, 444 |
| DpnII | |GATC | 50, 104, 380, 389, 444 |
| EcoRI | G|AATTC | 6 |
| Fnu4HI | GC|NGC | 240 |
| HindIII | A|AGCTT | 94 |
| HinfI | G|ANTC | 14, 191, 311, 339 |
| Hpy188I | TCN|GA | 11, 107, 249, 466 |
| Hpy99I | CG[AT]CG| | 407 |
| HpyCH4III | ACN|GT | 119 |
| HpyCH4V | TG|CA | 215, 276 |
| MboI | |GATC | 50, 104, 380, 389, 444 |
| MwoI | GCNNNNN|NNGC | 275, 430 |
| N.BstNBI | GAGTCNNNN|N | 19 |
| NlaIII | CATG| | 383, 440, 459 |
| NlaIV | GGN|NCC | 164 |
| PflFI | GACN|NNGTC | 195 |
| PspGI | |CC[AT]GG | 181 |
| Sau3AI | |GATC | 50, 104, 380, 389, 444 |
| Sau96I | G|GNCC | 206 |
| ScrFI | CC|NGG | 181 |
| SmlI | C|TPyPuAG | 97, 202 |
| Taqƒ¿I | T|CGA | 122, 405 |
| TfiI | G|A[AT]TC | 311, 339 |
| TseI | G|C[AT]GC | 240 |
| Tsp509I | |AATT | 5, 353 |
| TspRI | NNCA[CG]TGNN| | 215 |
| Tth111I | GACN|NNGTC | 195 |
| XmnI | GAANN|NNTTC | 76 |
Click here to view TAIR data
>AT5G53980.1 length:471
ATGGAGAATT CTCAGAGTCA GGGTAAAAAC AAGAAGAAGA GGCTAACACA | 50 |
AGATCAAGTT AGACAACTGG AGAAGTGCTT CACTATGAAC AAGAAGCTTG | 100 |
AGCCAGATCT GAAACTTCAA CTGTCGAACC AGCTTGGTCT ACCTCAAAGA | 150 |
CAAGTCGCTG TCTGGTTCCA AAACAAGCGA GCCAGGTTCA AGACTCAGTC | 200 |
TCTTGAGGTC CAACACTGCA CTCTTCAGTC CAAGCACGAA GCAGCTCTCT | 250 |
CCGACAAGGC AAAGTTAGAG CATCAAGTGC AGTTTCTCCA AGATGAGCTG | 300 |
AAGAGAGCAA GGAATCAGCT TGCTCTGTTC ACAAATCAAG ATTCTCCTGT | 350 |
TGATAATTCT AATCTTGGTT CTTGTGATGA AGATCATGAT GATCAAGTGG | 400 |
TGGTATTCGA CGAGCTTTAC GCTTGCTTTG TTAGCAATGG ACATGGATCT | 450 |
TCATCAACCT CATGGGTCTG A | 500 |
>AT5G53980.1 longest ORF length:156
MENSQSQGKN KKKRLTQDQV RQLEKCFTMN KKLEPDLKLQ LSNQLGLPQR | 50 |
QVAVWFQNKR ARFKTQSLEV QHCTLQSKHE AALSDKAKLE HQVQFLQDEL | 100 |
KRARNQLALF TNQDSPVDNS NLGSCDEDHD DQVVVFDELY ACFVSNGHGS | 150 |
SSTSWV | 200 |