fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G54230 ATMYB49 myb domain protein 49 (.1)

>AT5G54230.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, HindIII, HpaI, KpnI, NdeI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 837
EcoRV GAT|ATC 190, 493
NcoI C|CATGG 46
NheI G|CTAGC 801
StyI C|C[AT][AT]GG 46


Click here to view TAIR data

>AT5G54230.1 length:960
ATGGGAAAAT CTTCAAGCTC GGAGGAAAGT GAAGTGAAGA AAGGGCCATG 
50
GACTCCGGAG GAAGACGAGA AGCTCGTAGG CTATATTCAA ACGCACGGTC 
100
CCGGCAAATG GCGTACCCTT CCCAAGAACG CCGGGTTAAA AAGATGCGGG 
150
AAGAGTTGTA GATTGCGATG GACGAATTAT CTAAGACCCG ATATCAAGAG 
200
AGGAGAGTTC TCTCTTCAAG AGGAAGAAAC CATCATTCAA CTTCATCGTC 
250
TTCTTGGAAA CAAATGGTCC GCAATTGCTA TTCACTTACC AGGAAGAACA 
300
GATAATGAAA TCAAAAACTA TTGGAACACA CATATTAAAA AGAAACTCTT 
350
ACGAATGGGG ATTGATCCGG TGACTCATTG TCCCCGCATT AATCTTCTCC 
400
AGCTCTCTTC GTTTCTTACC TCATCATTGT TTAAATCTAT GTCACAACCG 
450
ATGAATACTC CATTTGATCT CACTACTTCA AATATTAATC CTGATATCTT 
500
GAATCATCTC ACTGCCTCTC TCAACAACGT TCAGACCGAA TCATACCAAC 
550
CAAACCAACA GCTTCAAAAC GACCTAAACA CTGACCAAAC CACTTTCACC 
600
GGTTTGCTCA ACTCAACACC ACCCGTTCAA TGGCAAAACA ATGGAGAATA 
650
CTTGGGAGAT TATCACAGTT ATACCGGTAC AGGTGATCCA TCTAATAACA 
700
AAGTCCCTCA AGCCGGAAAC TACTCATCAG CCGCATTTGT ATCCGACCAC 
750
ATTAATGATG GTGAGAATTT TAAGGCCGGA TGGAATTTCA GTTCATCAAT 
800
GCTAGCGGGA ACTTCATCGA GCAGCTCGAC ACCGTTGAAT TCGTCTTCGA 
850
CTTTTTATGT CAATGGTGGA AGCGAAGATG ATAGAGAGAG TTTTGGTAGC 
900
GACATGTTGA TGTTTCATCA TCATCATGAT CATAATAATA ATGCTTTGAA 
950
TCTATCATAA 
1000

>AT5G54230.1 longest ORF length:319
MGKSSSSEES EVKKGPWTPE EDEKLVGYIQ THGPGKWRTL PKNAGLKRCG 
50
KSCRLRWTNY LRPDIKRGEF SLQEEETIIQ LHRLLGNKWS AIAIHLPGRT 
100
DNEIKNYWNT HIKKKLLRMG IDPVTHCPRI NLLQLSSFLT SSLFKSMSQP 
150
MNTPFDLTTS NINPDILNHL TASLNNVQTE SYQPNQQLQN DLNTDQTTFT 
200
GLLNSTPPVQ WQNNGEYLGD YHSYTGTGDP SNNKVPQAGN YSSAAFVSDH 
250
INDGENFKAG WNFSSSMLAG TSSSSSTPLN SSSTFYVNGG SEDDRESFGS 
300
DMLMFHHHHD HNNNALNLS
350