fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G55020 ATMYB120 myb domain protein 120 (.1)

>AT5G55020.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 40
HindIII A|AGCTT 1095, 1325
NcoI C|CATGG 88
PstI CTGCA|G 1290
StyI C|C[AT][AT]GG 88, 393


Click here to view TAIR data

>AT5G55020.1 length:1572
ATGATCATGT ACGGAGGAGG AGGAGCAGGG AAGGACGGTG GATCCACCAA 
50
TCACTTATCA GACGGAGGAG TGATATTGAA GAAAGGTCCA TGGACGGCGG 
100
CGGAAGATGA GATACTTGCT GCGTACGTTA GAGAGAACGG TGAAGGGAAT 
150
TGGAACGCCG TTCAGAAAAA CACAGGTTTG GCTCGTTGCG GCAAAAGCTG 
200
CCGTCTTCGA TGGGCCAATC ACCTCCGACC AAATCTGAAA AAAGGCTCTT 
250
TCACCGGTGA CGAAGAACGT CTCATCATTC AGCTTCATGC TCAGCTTGGT 
300
AACAAATGGG CTCGCATGGC TGCTCAGTTA CCGGGAAGAA CAGACAACGA 
350
GATTAAGAAC TATTGGAACA CGAGATTGAA ACGACTTCTT CGCCAAGGAC 
400
TTCCTCTTTA TCCTCCAGAT ATTATCCCTA ACCATCAACT CCATCCACAT 
450
CCACATCATC AACAACAACA GCAACATAAC CATCATCATC ATCATCATCA 
500
ACAACAACAA CAACATCAAC AAATGTATTT TCAACCACAA TCTTCACAAC 
550
GAAACACACC ATCATCTTCC CCTCTTCCAT CTCCAACACC AGCAAACGCA 
600
AAGTCCTCAT CATCCTTCAC TTTTCATACC ACGACTGCTA ACCTCCTCCA 
650
TCCACTTAGC CCTCACACTC CAAACACACC ATCTCAACTC TCTTCCACAC 
700
CGCCTCCACC ACCACTTTCC TCTCCTTTAT GTTCCCCTCG CAACAACCAA 
750
TACCCGACCC TTCCCCTCTT TGCCCTCCCG CGTTCCCAAA TCAACAACAA 
800
CAACAACGGA AATTTCACTT TCCCTAGACC TCCACCTCTC CTTCAACCGC 
850
CTTCATCACT CTTCGCAAAA CGTTACAACA ATGCTAACAC TCCTCTTAAT 
900
TGCATCAACC GCGTCTCAAC CGCACCATTT TCCCCTGTTT CAAGAGACTC 
950
CTACACTTCC TTTCTTACAT TGCCTTACCC TTCCCCAACC GCTCAAACCG 
1000
CTACTTACCA CAATACTAAT AACCCTTACT CTTCCTCTCC TTCCTTCTCT 
1050
TTAAACCCTT CTTCTTCTTC TTACCCTACA TCAACTTCTT CCCCAAGCTT 
1100
TCTTCACTCC CATTACACTC CTTCTTCCAC CTCATTTCAT ACCAACCCAG 
1150
TTTACTCCAT GAAACAAGAG CAGCTCCCTT CAAACCAAAT TCCCCAAATA 
1200
GATGGCTTCA ATAACGTCAA CAACTTCACA GACAACGAGA GACAGAATCA 
1250
TAACCTTAAC AGTTCCGGTG CTCATAGAAG AAGTAGTAGC TGCAGCCTCT 
1300
TAGAGGATGT CTTCGAAGAG GCCGAAGCTT TAGCCTCTGG AGGCAGAGGC 
1350
CGACCTCCAA AACGAAGACA ACTCACAGCT TCTCTTCCGA ACCACAACAA 
1400
CAACACCAAC AACAACGACA ACTTCTTCTC GGTTAGTTTC GGACATTATG 
1450
ATTCTTCTGA CAACTTATGT TCCTTGCAAG GTAAAACTAA AACCACTTAC 
1500
AACACTTCAA ATCTAAACTA CTCTTCTCTC CAAGTAAAAT GTAAAATGTT 
1550
TATGATCAAA ACGCAGATTT GA
1600

>AT5G55020.1 longest ORF length:523
MIMYGGGGAG KDGGSTNHLS DGGVILKKGP WTAAEDEILA AYVRENGEGN 
50
WNAVQKNTGL ARCGKSCRLR WANHLRPNLK KGSFTGDEER LIIQLHAQLG 
100
NKWARMAAQL PGRTDNEIKN YWNTRLKRLL RQGLPLYPPD IIPNHQLHPH 
150
PHHQQQQQHN HHHHHHQQQQ QHQQMYFQPQ SSQRNTPSSS PLPSPTPANA 
200
KSSSSFTFHT TTANLLHPLS PHTPNTPSQL SSTPPPPPLS SPLCSPRNNQ 
250
YPTLPLFALP RSQINNNNNG NFTFPRPPPL LQPPSSLFAK RYNNANTPLN 
300
CINRVSTAPF SPVSRDSYTS FLTLPYPSPT AQTATYHNTN NPYSSSPSFS 
350
LNPSSSSYPT STSSPSFLHS HYTPSSTSFH TNPVYSMKQE QLPSNQIPQI 
400
DGFNNVNNFT DNERQNHNLN SSGAHRRSSS CSLLEDVFEE AEALASGGRG 
450
RPPKRRQLTA SLPNHNNNTN NNDNFFSVSF GHYDSSDNLC SLQGKTKTTY 
500
NTSNLNYSSL QVKCKMFMIK TQI
550