fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G56110 MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1)

>AT5G56110.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 661
NcoI C|CATGG 609
NdeI CA|TATG 656, 952
StyI C|C[AT][AT]GG 609


Click here to view TAIR data

>AT5G56110.1 length:963
ATGGGTCGGA TTCCATGTTG TGAAAAGGAG AATGTGAAGA GAGGACAATG 
50
GACTCCTGAA GAAGACAACA AATTGGCTTC TTATATTGCT CAACATGGTA 
100
CTCGTAATTG GCGTCTCATC CCTAAGAATG CTGGGTTGCA AAGATGTGGG 
150
AAGAGTTGTA GGCTGCGATG GACAAACTAT CTGCGTCCGG ATTTGAAACA 
200
TGGCCAGTTC TCGGAGGCTG AAGAACATAT CATTGTCAAG TTTCACTCTG 
250
TTCTTGGTAA CCGGTGGTCG TTGATTGCGG CGCAACTTCC TGGTCGGACA 
300
GACAACGATG TGAAAAATTA TTGGAACACG AAGCTGAAGA AGAAGTTGTC 
350
AGGAATGGGA ATAGATCCGG TGACCCACAA GCCTTTCTCG CATCTAATGG 
400
CAGAGATCAC CACTACACTT AATCCTCCTC AGGTTTCTCA CCTAGCCGAA 
450
GCTGCCCTCG GCTGTTTCAA GGACGAGATG CTTCACTTGC TCACCAAGAA 
500
ACGTGTTGAC CTAAACCAAA TCAACTTTTC AAACCATAAC CCTAACCCAA 
550
ACAACTTTCA CGAGATTGCT GATAATGAAG CTGGTAAGAT AAAGATGGAT 
600
GGTTTGGACC ATGGGAATGG GATAATGAAG TTATGGGACA TGGGTAATGG 
650
ATTCTCATAT GGATCCTCTT CGTCTTCGTT TGGGAATGAA GAAAGAAATG 
700
ATGGATCAGC GTCTCCTGCC GTTGCAGCTT GGAGGGGTCA CGGAGGAATA 
750
CGTACCGCGG TAGCTGAAAC CGCGGCAGCG GAGGAGGAGG AGAGAAGGAA 
800
GCTGAAGGGA GAAGTGGTTG ATCAAGAGGA GATTGGATCT GAAGGAGGAA 
850
GAGGAGATGG AATGACGATG ATGAGGAACC ATCATCATCA TCAACATGTG 
900
TTTAATGTGG ATAATGTCTT GTGGGATTTA CAAGCTGATG ATCTCATCAA 
950
TCATATGGTT TGA
1000

>AT5G56110.1 longest ORF length:320
MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG 
50
KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT 
100
DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE 
150
AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD 
200
GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI 
250
RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV 
300
FNVDNVLWDL QADDLINHMV 
350