Locus |
Common name |
Short description |
AT5G56110 |
MS188, ATMYB80, AtMYB103 |
MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) |
>AT5G56110.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
BamHI
| G|GATCC |
661 |
NcoI
| C|CATGG |
609 |
NdeI
| CA|TATG |
656, 952 |
StyI
| C|C[AT][AT]GG |
609 |
Click here to view TAIR data
>AT5G56110.1 length:963
ATGGGTCGGA TTCCATGTTG TGAAAAGGAG AATGTGAAGA GAGGACAATG | 50 |
GACTCCTGAA GAAGACAACA AATTGGCTTC TTATATTGCT CAACATGGTA | 100 |
CTCGTAATTG GCGTCTCATC CCTAAGAATG CTGGGTTGCA AAGATGTGGG | 150 |
AAGAGTTGTA GGCTGCGATG GACAAACTAT CTGCGTCCGG ATTTGAAACA | 200 |
TGGCCAGTTC TCGGAGGCTG AAGAACATAT CATTGTCAAG TTTCACTCTG | 250 |
TTCTTGGTAA CCGGTGGTCG TTGATTGCGG CGCAACTTCC TGGTCGGACA | 300 |
GACAACGATG TGAAAAATTA TTGGAACACG AAGCTGAAGA AGAAGTTGTC | 350 |
AGGAATGGGA ATAGATCCGG TGACCCACAA GCCTTTCTCG CATCTAATGG | 400 |
CAGAGATCAC CACTACACTT AATCCTCCTC AGGTTTCTCA CCTAGCCGAA | 450 |
GCTGCCCTCG GCTGTTTCAA GGACGAGATG CTTCACTTGC TCACCAAGAA | 500 |
ACGTGTTGAC CTAAACCAAA TCAACTTTTC AAACCATAAC CCTAACCCAA | 550 |
ACAACTTTCA CGAGATTGCT GATAATGAAG CTGGTAAGAT AAAGATGGAT | 600 |
GGTTTGGACC ATGGGAATGG GATAATGAAG TTATGGGACA TGGGTAATGG | 650 |
ATTCTCATAT GGATCCTCTT CGTCTTCGTT TGGGAATGAA GAAAGAAATG | 700 |
ATGGATCAGC GTCTCCTGCC GTTGCAGCTT GGAGGGGTCA CGGAGGAATA | 750 |
CGTACCGCGG TAGCTGAAAC CGCGGCAGCG GAGGAGGAGG AGAGAAGGAA | 800 |
GCTGAAGGGA GAAGTGGTTG ATCAAGAGGA GATTGGATCT GAAGGAGGAA | 850 |
GAGGAGATGG AATGACGATG ATGAGGAACC ATCATCATCA TCAACATGTG | 900 |
TTTAATGTGG ATAATGTCTT GTGGGATTTA CAAGCTGATG ATCTCATCAA | 950 |
TCATATGGTT TGA | 1000 |
>AT5G56110.1 longest ORF length:320
MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG | 50 |
KSCRLRWTNY LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT | 100 |
DNDVKNYWNT KLKKKLSGMG IDPVTHKPFS HLMAEITTTL NPPQVSHLAE | 150 |
AALGCFKDEM LHLLTKKRVD LNQINFSNHN PNPNNFHEIA DNEAGKIKMD | 200 |
GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA VAAWRGHGGI | 250 |
RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV | 300 |
FNVDNVLWDL QADDLINHMV | 350 |
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