Locus |
Common name |
Short description |
AT5G56840 |
|
myb-like transcription factor family protein (.1) |
>AT5G56840.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XhoI
Name |
Recognition sequence |
Cut positions |
EcoRV
| GAT|ATC |
581 |
HindIII
| A|AGCTT |
319, 646 |
NcoI
| C|CATGG |
274 |
SacI
| GAGCT|C |
534 |
StyI
| C|C[AT][AT]GG |
274 |
XbaI
| T|CTAGA |
96, 349 |
Click here to view TAIR data
>AT5G56840.1 length:702
ATGGGCAGAA GATGCTCACA CTGTGGAAAC GTAGGACATA ACTCAAGAAC | 50 |
ATGTTCTTCT TACCAAACAA GAGTAGTTAG GCTCTTTGGT GTTCATCTAG | 100 |
ACACCACAAG CTCTTCTCCG CCGCCTCCTC CTCCTCCCTC GATTTTGGCC | 150 |
GCTGCAATAA AGAAAAGTTT CAGCATGGAT TGCTTGCCGG CATGTTCCTC | 200 |
CTCTTCCTCT TCCTTTGCTG GTTATCTCTC CGATGGTCTC GCCCATAAAA | 250 |
CACCTGACCG CAAAAAAGGG GTTCCATGGA CGGCGGAAGA GCACCGGACG | 300 |
TTTCTAATTG GATTAGAAAA GCTTGGAAAA GGAGATTGGA GAGGAATCTC | 350 |
TAGAAACTTC GTCGTCACAA AATCCCCGAC ACAAGTGGCA AGTCATGCTC | 400 |
AAAAATACTT TCTCCGGCAA ACTACCACTC TCCATCACAA GAGACGCCGC | 450 |
ACCAGCCTCT TTGATATGGT TTCGGCCGGC AATGTTGAAG AAAATAGTAC | 500 |
TACTAAGAGG ATATGTAATG ATCATATTGG GTCGAGCTCA AAGGTTGTTT | 550 |
GGAAACAAGG ATTACTCAAT CCTCGTCTTG GATATCCAGA TCCGAAAGTA | 600 |
TCAGTATCCG GCTCGGGTAA CTCCGGTGGA CTCGATCTTG AGCTGAAGCT | 650 |
TGCGTCCATT CAATCTCCTG AATCGAATAT TAGACCTATT AGCGTTACGT | 700 |
GA | 750 |
>AT5G56840.1 longest ORF length:233
MGRRCSHCGN VGHNSRTCSS YQTRVVRLFG VHLDTTSSSP PPPPPPSILA | 50 |
AAIKKSFSMD CLPACSSSSS SFAGYLSDGL AHKTPDRKKG VPWTAEEHRT | 100 |
FLIGLEKLGK GDWRGISRNF VVTKSPTQVA SHAQKYFLRQ TTTLHHKRRR | 150 |
TSLFDMVSAG NVEENSTTKR ICNDHIGSSS KVVWKQGLLN PRLGYPDPKV | 200 |
SVSGSGNSGG LDLELKLASI QSPESNIRPI SVT | 250 |
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