fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G56840 myb-like transcription factor family protein (.1)

>AT5G56840.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 581
HindIII A|AGCTT 319, 646
NcoI C|CATGG 274
SacI GAGCT|C 534
StyI C|C[AT][AT]GG 274
XbaI T|CTAGA 96, 349


Click here to view TAIR data

>AT5G56840.1 length:702
ATGGGCAGAA GATGCTCACA CTGTGGAAAC GTAGGACATA ACTCAAGAAC 
50
ATGTTCTTCT TACCAAACAA GAGTAGTTAG GCTCTTTGGT GTTCATCTAG 
100
ACACCACAAG CTCTTCTCCG CCGCCTCCTC CTCCTCCCTC GATTTTGGCC 
150
GCTGCAATAA AGAAAAGTTT CAGCATGGAT TGCTTGCCGG CATGTTCCTC 
200
CTCTTCCTCT TCCTTTGCTG GTTATCTCTC CGATGGTCTC GCCCATAAAA 
250
CACCTGACCG CAAAAAAGGG GTTCCATGGA CGGCGGAAGA GCACCGGACG 
300
TTTCTAATTG GATTAGAAAA GCTTGGAAAA GGAGATTGGA GAGGAATCTC 
350
TAGAAACTTC GTCGTCACAA AATCCCCGAC ACAAGTGGCA AGTCATGCTC 
400
AAAAATACTT TCTCCGGCAA ACTACCACTC TCCATCACAA GAGACGCCGC 
450
ACCAGCCTCT TTGATATGGT TTCGGCCGGC AATGTTGAAG AAAATAGTAC 
500
TACTAAGAGG ATATGTAATG ATCATATTGG GTCGAGCTCA AAGGTTGTTT 
550
GGAAACAAGG ATTACTCAAT CCTCGTCTTG GATATCCAGA TCCGAAAGTA 
600
TCAGTATCCG GCTCGGGTAA CTCCGGTGGA CTCGATCTTG AGCTGAAGCT 
650
TGCGTCCATT CAATCTCCTG AATCGAATAT TAGACCTATT AGCGTTACGT 
700
GA
750

>AT5G56840.1 longest ORF length:233
MGRRCSHCGN VGHNSRTCSS YQTRVVRLFG VHLDTTSSSP PPPPPPSILA 
50
AAIKKSFSMD CLPACSSSSS SFAGYLSDGL AHKTPDRKKG VPWTAEEHRT 
100
FLIGLEKLGK GDWRGISRNF VVTKSPTQVA SHAQKYFLRQ TTTLHHKRRR 
150
TSLFDMVSAG NVEENSTTKR ICNDHIGSSS KVVWKQGLLN PRLGYPDPKV 
200
SVSGSGNSGG LDLELKLASI QSPESNIRPI SVT
250