fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G56900 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)

>AT5G56900.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 541
HindIII A|AGCTT 922
PstI CTGCA|G 970
SacI GAGCT|C 739, 869
StyI C|C[AT][AT]GG 783, 1043


Click here to view TAIR data

>AT5G56900.1 length:1215
ATGGAAGTTA AACCTCGCTA TCACATTGCA GGTTCTATGG GGGTATTTTA 
50
TGCCCGTGAA CCTTACCTCA ACGCTGAATC TACTCATGTA ACTCGCTTTA 
100
TTGGTCTTGC TCAAGTTGGA AATAAAAACA AACAGAAATT TCTTCATGCG 
150
CTTTCTCCTA CACCAACATC TACCATGTCA CCAGCAGAGC TTAGTGCAAA 
200
GCCTCCAAAA ACTACGCTAT GGCCTTATAA TTTACAAGAT GGAGCTGCTG 
250
AATCGAAGAA GAGGCCAAAC GATAGTGACT CTGATTCACA GTATTGGAGG 
300
TATGATGTCC CAAAGCGGCA AAAGAGTGGA TCTCAAGGGG AAAAGCTCTG 
350
TTTCAAATTT GTCTGCTCAG GTTCCTGTCC TCGTGGTGAA GATTGCCATT 
400
TCCAACACAA CGCTGAAGCA AGAGAACAGT GTCGTAGAGG TGTTTGTCTT 
450
GATCTTATCA TCAAAGGTAA GTGTGAAAAA GGCCCAGAGT GCAGCTACAA 
500
GCATGAGTTT CAAGATGAAA GTAGCATACA AAGGAAGCCC AGATCTGAGA 
550
ATGCTAACAG GTCAAAAGAA TGCTGGTTTT GTCTATCAAG CCCGAGTGTG 
600
GAGTCACATT TAATCGTCAG TGTAGGGGAA AGTTTTTATT GTGCTCTACC 
650
CAAAGGTTCG CTAGTCGAAG ATCACATATT GATAATCCCA ATCGAACATT 
700
TGCCCAATAC TCTGGTTTTA TCCCCTGAGG TTGAATCAGA GCTCAGTAGA 
750
TACCAAAATG GTCTGAGAAA TTGTTATAAG AGCCAAGGAA ATGATGCAGT 
800
TTTCTTTGAA TTGGTCTCTA AACGTGTTTC TCATGCTAAC CTCCAAGTTG 
850
TTCCTGTTCC ATCATCCAGA GCTCGTCTTC TTCCTAATAT CTTTAGTCTG 
900
GCGGCTGAAA AACTGGGCTT TAAGCTTGTG ACTAAAAAGT TTAATGATAG 
950
TACTGATGGC AGAAAATATC TGCAGAAGGA ATATAATGCG GCATTGGGTC 
1000
TCTTCTATGT GGAACTTCCT GATGGAACTG TGCTATCACA CACCTTGGAA 
1050
GAAAACGAAG TATTCCCTGC GCAGTTTGGA CGGGAGGTTC TAGCAGGGTT 
1100
GCTAAAGATC CCAGATAGGG CCGATTGGAG AAACTGTAAA ATTAGCCAAG 
1150
AAGAGGAGGC AAAGCTGGCT GAAGATTTCA AGAAACAATT TCAAGAATTT 
1200
GACCCTTGCC AATAA
1250

>AT5G56900.1 longest ORF length:404
MEVKPRYHIA GSMGVFYARE PYLNAESTHV TRFIGLAQVG NKNKQKFLHA 
50
LSPTPTSTMS PAELSAKPPK TTLWPYNLQD GAAESKKRPN DSDSDSQYWR 
100
YDVPKRQKSG SQGEKLCFKF VCSGSCPRGE DCHFQHNAEA REQCRRGVCL 
150
DLIIKGKCEK GPECSYKHEF QDESSIQRKP RSENANRSKE CWFCLSSPSV 
200
ESHLIVSVGE SFYCALPKGS LVEDHILIIP IEHLPNTLVL SPEVESELSR 
250
YQNGLRNCYK SQGNDAVFFE LVSKRVSHAN LQVVPVPSSR ARLLPNIFSL 
300
AAEKLGFKLV TKKFNDSTDG RKYLQKEYNA ALGLFYVELP DGTVLSHTLE 
350
ENEVFPAQFG REVLAGLLKI PDRADWRNCK ISQEEEAKLA EDFKKQFQEF 
400
DPCQ
450