fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G57420 IAA33 indole-3-acetic acid inducible 33 (.1)

>AT5G57420.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BglII A|GATCT 423
EcoRI G|AATTC 461
StyI C|C[AT][AT]GG 168


Click here to view TAIR data

>AT5G57420.1 length:516
ATGAATAGTT TCGAGCCACA AAGCCAAGAC TCTTTGCAAA GAAGGTTTCA 
50
TCAAGACAAC AGCACCACAC AACAACCTCG TGACACCACG ACACCTTTCA 
100
TACCCAAACC GGCTTCCAAA AACCATAATA ATAGCAACTC CAGCTCTGGA 
150
GCGGCCGGGA GATCATTCCA AGGCTTTGGG CTTAACGTAG AGGACGATCT 
200
TGTTTCATCG GTGGTTCCTC CGGTTACGGT TGTGCTAGAG GGACGTTCTA 
250
TATGTCAACG CATAAGCCTA GACAAGCATG GGAGTTATCA GAGCTTGGCT 
300
TCGGCTCTAA GGCAAATGTT TGTCGATGGA GCTGATTCAA CGGACGATCT 
350
TGATCTGTCA AACGCCATTC CTGGCCATCT TATTGCTTAT GAAGACATGG 
400
AGAACGATCT CCTTCTTGCC GGAGATCTTA CTTGGAAGGA CTTTGTTCGT 
450
GTAGCGAAGA GAATTCGAAT CTTGCCGGTC AAGGGAAACA CAAGACAAGT 
500
TAAAAGAAAC GAGTGA
550

>AT5G57420.1 longest ORF length:171
MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG 
50
AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA 
100
SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR 
150
VAKRIRILPV KGNTRQVKRN E
200