fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G58010 LRL3, bHLH082 LJRHL1-like 3 (.1)

>AT5G58010.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 102, 772
EcoRI G|AATTC 31
EcoRV GAT|ATC 744
PstI CTGCA|G 833
SalI G|TCGAC 160, 255
StyI C|C[AT][AT]GG 884


Click here to view TAIR data

>AT5G58010.1 length:894
ATGGAAAATG GAAATGGAGA AGGAAAAGGA GAATTCATAA ACCAAAACAA 
50
TGACTTCTTC CTTGATTCCA TGTCAATGCT CTCCTCTCTC CCTCCTTGTT 
100
GGGATCCATC TCTTCCTCCT CCTCCTCCTC CGCCACAATC TCTTTTCCAC 
150
GCTCTAGCCG TCGACGCCCC CTTCCCCGAC CAGTTCCATC ATCCTCAGGA 
200
GTCAGGAGGT CCAACAATGG GTAGCCAAGA AGGGTTACAG CCACAAGGTA 
250
CAGTGTCGAC CACGAGCGCA CCTGTTGTTC GTCAAAAGCC AAGAGTTCGA 
300
GCCAGGAGAG GCCAAGCCAC CGATCCTCAC AGTATCGCTG AGAGGCTTAG 
350
AAGGGAACGC ATCGCAGAGC GTATGAAGTC TCTCCAAGAA CTGGTTCCCA 
400
ACACCAACAA GACGGATAAG GCATCAATGT TGGACGAGAT CATCGAGTAT 
450
GTTAGGTTCC TTCAGCTTCA AGTCAAAGTA CTAAGCATGA GCAGATTGGG 
500
AGGTGCAGGA TCAGTTGGTC CACGCCTCAA TGGTCTCTCC GCAGAGGCAG 
550
GAGGACGGCT CAATGCCCTC ACTGCACCGT GCAATGGCTT AAATGGGAAT 
600
GGAAACGCTA CAGGATCGTC CAATGAGAGC CTAAGGTCAA CAGAACAAAG 
650
AGTGGCGAAA CTGATGGAGG AAGACATGGG ATCAGCAATG CAATACCTTC 
700
AAGGGAAGGG GCTTTGCTTA ATGCCAATAT CTCTCGCAAC CGCGATATCA 
750
TCATCAACTA CTCACTCTCG TGGATCCCTC TTTAACCCCA TCTCCAGTGC 
800
TGTAGCAGCA GAGGATTCAA ATGTAACAGC AACTGCAGTT GCTGCACCTG 
850
AAGCCTCGTC TACTATGGAT GATGTATCTG CTTCCAAGGC CTGA
900

>AT5G58010.1 longest ORF length:297
MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH 
50
ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR 
100
ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY 
150
VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN 
200
GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS 
250
SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA
300