fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G58080 ARR18 response regulator 18 (.1)

>AT5G58080.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 1707
EcoRI G|AATTC 1229
PstI CTGCA|G 1439
StyI C|C[AT][AT]GG 891, 1287
XbaI T|CTAGA 1297


Click here to view TAIR data

>AT5G58080.1 length:1857
ATGAGGGTTC TTGCTGTGGA TGACAATCCA ACCTGCCTTC GGAAACTCGA 
50
AGAGTTGCTG CTTCGTTGCA AGTATCATGT GACAAAGACA ATGGAGTCGA 
100
GGAAAGCTCT GGAAATGCTG AGAGAAAACA GCAACATGTT TGATCTGGTG 
150
ATAAGCGATG TAGAGATGCC AGACACGGAT GGTTTTAAGT TGCTTGAAAT 
200
TGGTCTTGAA ATGGACCTTC CTGTCATCAT GTTGTCAGCT CATAGCGACT 
250
ATGACAGCGT TATGAAAGGT ATTATACATG GCGCTTGCGA TTATCTGGTC 
300
AAGCCTGTTG GACTCAAGGA GCTTCAGAAT ATATGGCATC ATGTTGTGAA 
350
GAAGAACATT AAATCTTACG CAAAACTGCT CCCACCTTCT GAATCTGATT 
400
CCGTCCCAAG CGCCAGCAGG AAACGGAAAG ACAAAGTCAA TGACAGTGGT 
450
GATGAAGATG ACAGTGACAG AGAAGAGGAT GATGGTGAGG GGAGTGAACA 
500
GGATGGTGAC GGGTCAGGTA CGCGGAAGAA GCCACGTGTT GTTTGGTCTC 
550
AGGAGCTTCA CCAGAAGTTT GTCAGTGCCG TTCAGCAATT GGGCCTCGAC 
600
AAGGCTGTTC CCAAAAAAAT ACTTGATCTC ATGAGTATAG AAGGTCTCAC 
650
TAGGGAAAAC GTAGCCAGTC ATTTGCAGAA GTACAGACTG TACTTGAAAA 
700
AGATAGACGA AGGTCAGCAG CAAAATATGA CCCCAGATGC ATTTGGAACA 
750
AGAGATTCAT CTTACTTTCA GATGGCTCAA CTTGATGGAC TTAGAGATTT 
800
TACTGCCGCA AGACAAATTC CAAGCTCAGG ACTCTTATCG CGTTCCCATC 
850
TCACCAAACT CCAACCCCCT ATGTATTCAT CGATAAATCT CCAAGGAATG 
900
AACTCCTCCA GCTTCATCCA ACAGGGGCAT CACCAGAACT CAAGCAATTC 
950
AGCTAATCCG TTTGGAACAT ATCACAGTAC TCTGTCACCA AGAATCCAGA 
1000
ACGTGAATCT GTTTCAGCGA ACTTCATCTC CACTAGAACC CCTCCAGTTT 
1050
CCTAGAAGCA AGTCATACAT TGGAGATTTT AAAGGCTTAG GGGACAGAGC 
1100
TATTGGCGGT AGCTTCCTAG ATACTTGTAT GCCATTTGGT AGCTCTAGCA 
1150
CCTCTTTACC AAGTGCTTCC ACCAATCCTC TAATGTTGCA AGCAAACTAT 
1200
ACACAACCCC TGCATATAGC CTCAGATGGA ATTCAGCCTT GCATCGAGGG 
1250
AACTCCGTCC AACTCTGCCT CCCCAAACAT CAGTTTCCAA GGCTTATCTA 
1300
GATTTCCTGG TCATAGCTGG CAAGGGAATT TGAACACAAC CAGATTCCCA 
1350
CCGAGTTCCT TACCACTAAA TCTTGCTTTC TTGCCGGATC AAGTGACATG 
1400
TGCAGGGAAC AATCTGGGAG ATTGTACTTC TTTGGTTTCT GCAGAGAATC 
1450
CTGGTGGAGA GATGCAGTGT GATCCTCAAT TACTTGGCGG CTTCATGCAG 
1500
AACGTGAATC CGTTAGGCGG ACAGAAATGG GAGCAACAGA ACTGCACCAT 
1550
GCTGAACAAT CCATTCGGTA ACATTGAGTA TCCTCTACCC GCAGATAACA 
1600
TGGTTTTCAG AGACAACAAT TCAACCAGAA GCAAAGGCTT GGATGAGTCA 
1650
CTGATGAACC CAATAGACAA CAGTCAAGAG TATGTTGGAA AAGCTACTAC 
1700
AATGCTGGAT CCAGAGATGA AGTCGGGAAA GCCAGAGAAT GACAACCAGC 
1750
ATGATGTATT CGATGACATA ATGAATGAGA TGATGAAACA GGAGGAGAAT 
1800
AACGGAATGG TGCCAGTGGC TACTAGATTT GGCTTTGATT CATTTCCTCC 
1850
ACCTTAG
1900

>AT5G58080.1 longest ORF length:618
MRVLAVDDNP TCLRKLEELL LRCKYHVTKT MESRKALEML RENSNMFDLV 
50
ISDVEMPDTD GFKLLEIGLE MDLPVIMLSA HSDYDSVMKG IIHGACDYLV 
100
KPVGLKELQN IWHHVVKKNI KSYAKLLPPS ESDSVPSASR KRKDKVNDSG 
150
DEDDSDREED DGEGSEQDGD GSGTRKKPRV VWSQELHQKF VSAVQQLGLD 
200
KAVPKKILDL MSIEGLTREN VASHLQKYRL YLKKIDEGQQ QNMTPDAFGT 
250
RDSSYFQMAQ LDGLRDFTAA RQIPSSGLLS RSHLTKLQPP MYSSINLQGM 
300
NSSSFIQQGH HQNSSNSANP FGTYHSTLSP RIQNVNLFQR TSSPLEPLQF 
350
PRSKSYIGDF KGLGDRAIGG SFLDTCMPFG SSSTSLPSAS TNPLMLQANY 
400
TQPLHIASDG IQPCIEGTPS NSASPNISFQ GLSRFPGHSW QGNLNTTRFP 
450
PSSLPLNLAF LPDQVTCAGN NLGDCTSLVS AENPGGEMQC DPQLLGGFMQ 
500
NVNPLGGQKW EQQNCTMLNN PFGNIEYPLP ADNMVFRDNN STRSKGLDES 
550
LMNPIDNSQE YVGKATTMLD PEMKSGKPEN DNQHDVFDDI MNEMMKQEEN 
600
NGMVPVATRF GFDSFPPP
650