fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G59340 WOX2 WUSCHEL related homeobox 2 (.1)

>AT5G59340.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AciI, AclI, AfeI, AflII, AflIII, AhdI, AluI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsmAI, BsmBI, BsmFI, BsoBI, Bsp1286I, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssKI, BssSI, BstBI, BstEII, BstF5I, BstNI, BstUI, BstXI, BstYI, Bsu36I, BtgI, BtrI, BtsI, ClaI, DraI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HgaI, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, , NarI, NciI, NcoI, NheI, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspGI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, ScrFI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 367
AgeI A|CCGGT 133
BclI T|GATCA 339
BfaI C|TAG 201, 687
BsaJI C|CNNGG 660
BsaWI [AT]|CCGG[AT] 133, 675
BsiEI CGPuPy|CG 702
BsiWI C|GTACG 149
BslI CCNNNNN|NNGG 414, 580
BsmI GAATGCN| 489, 619
BsrFI Pu|CCGGPy 133, 550, 700
BsrI ACTGGN| 72, 182
BstAPI GCANNNN|NTGC 627
BstZ17I GTA|TAC 367
Cac8I GCN|NGC 28, 330, 700
Cfr10I [AG]|CCGG[TC] 133, 550, 700
DdeI C|TNAG 510
DpnI GA-CH3|TC 56, 61, 113, 127, 338, 377
DpnII |GATC 56, 61, 113, 127, 338, 377
DrdI GACNNNN|NNGTC 565
EaeI Py|GGCCPu 153, 702
EagI C|GGCCG 702
Fnu4HI GC|NGC 477, 710
HaeII PuGCGC|Py 109
HaeIII GG|CC 152, 701
HhaI GCG|C 108, 229
HinP1I G|CGC 108, 229
HinfI G|ANTC 119, 350, 404, 669
HpaII C|CGG 132, 549, 674, 699
Hpy188I TCN|GA 59, 104, 116, 446, 459, 500, 511
HpyCH4III ACN|GT 432, 541
HpyCH4IV A|CGT 171, 297, 564
HpyCH4V TG|CA 619
MboI |GATC 56, 61, 113, 127, 338, 377
MseI T|TAA 561
MslI CAPyNN|NNPuTG 362, 487
MspI C|CGG 132, 549, 674, 699
MwoI GCNNNNN|NNGC 24, 627
NaeI GCC|GGC 700
NdeI CA|TATG 346
NgoMIV G|CCGGC 700
NlaIII CATG| 232, 356
NlaIV GGN|NCC 44, 185, 697
PflMI CCANNNN|NTGG 414
RsaI GT|AC 148, 316
Sau3AI |GATC 56, 61, 113, 127, 338, 377
StyI C|C[AT][AT]GG 660
Taqƒ¿I T|CGA 159, 756
TfiI G|A[AT]TC 119, 350, 404, 669
TseI G|C[AT]GC 477, 710
Tsp45I |GT[CG]AC 435
Tsp509I |AATT 493, 569
TspRI NNCA[CG]TGNN| 577


Click here to view TAIR data

>AT5G59340.1 length:783
ATGGAAAACG AAGTAAACGC AGGAACAGCA AGCAGTTCAA GATGGAACCC 
50
AACGAAAGAT CAGATCACGC TACTGGAAAA TCTTTACAAG GAAGGAATAC 
100
GAACTCCGAG CGCCGATCAG ATTCAGCAGA TCACCGGTAG GCTTCGTGCG 
150
TACGGCCATA TCGAAGGTAA AAACGTCTTT TACTGGTTCC AGAACCATAA 
200
GGCTAGGCAA CGCCAAAAGC AGAAACAGGA GCGCATGGCT TACTTCAATC 
250
GCCTCCTCCA CAAAACCTCC CGTTTCTTCT ACCCCCCTCC TTGCTCAAAC 
300
GTGGGTTGTG TCAGTCCGTA CTATTTACAG CAAGCAAGTG ATCATCATAT 
350
GAATCAACAT GGAAGTGTAT ACACAAACGA TCTTCTTCAC AGAAACAATG 
400
TGATGATTCC AAGTGGTGGC TACGAGAAAC GGACAGTCAC ACAACATCAG 
450
AAACAACTTT CAGACATAAG AACAACAGCA GCCACAAGAA TGCCAATTTC 
500
TCCGAGTTCA CTCAGATTTG ACAGATTTGC CCTCCGTGAT AACTGTTATG 
550
CCGGTGAGGA CATTAACGTC AATTCCAGTG GACGGAAAAC ACTCCCTCTT 
600
TTTCCTCTTC AGCCTTTGAA TGCAAGTAAT GCTGATGGTA TGGGAAGTTC 
650
CAGTTTTGCC CTTGGTAGTG ATTCTCCGGT GGATTGTTCT AGCGATGGAG 
700
CCGGCCGAGA GCAGCCGTTT ATTGATTTCT TTTCTGGTGG TTCTACTTCT 
750
ACTCGTTTCG ATAGTAATGG TAATGGGTTG TAA
800

>AT5G59340.1 longest ORF length:260
MENEVNAGTA SSSRWNPTKD QITLLENLYK EGIRTPSADQ IQQITGRLRA 
50
YGHIEGKNVF YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFYPPPCSN 
100
VGCVSPYYLQ QASDHHMNQH GSVYTNDLLH RNNVMIPSGG YEKRTVTQHQ 
150
KQLSDIRTTA ATRMPISPSS LRFDRFALRD NCYAGEDINV NSSGRKTLPL 
200
FPLQPLNASN ADGMGSSSFA LGSDSPVDCS SDGAGREQPF IDFFSGGSTS 
250
TRFDSNGNGL 
300