fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G59780 ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3)

>AT5G59780.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
NcoI C|CATGG 278
NdeI CA|TATG 124, 288
SpeI A|CTAGT 214
StyI C|C[AT][AT]GG 278, 410


Click here to view TAIR data

>AT5G59780.1 length:513
ATGACTCCAC AAGAAGAGCG TTTAGTCCTT GAGCTTCACG CCAAATGGGG 
50
AAACAGGTGG TCAAAAATTG CCCGGAAATT ACCGGGGAGA ACAGATAATG 
100
AGATAAAGAA CTACTGGAGG ACTCATATGA GGAAGAAGGC TCAAGAGAAG 
150
AAGCGACCTA TGTCTCCTAC TTCCTCATCT TCAAACTGTT GCTCATCATC 
200
TATGACCACT ACTACTAGTC AAGACACTGG AGGCTCCAAC GGGAAAATGA 
250
ATCAAGAATG CGAAGACGGG TACTACTCCA TGGATGACAT ATGGAGAGAG 
300
ATTGATCAGT CTGGAGCAAA CGTTATTAAA CCGGTAAAAG ACAACTACTA 
350
CTCAGAGCAA AGCTGTTACT TGAATTTCCC TCCTCTGGCT TCTCCAACAT 
400
GGGAAAGTTC CTTGGAATCT ATATGGAACA TGGATGCAGA TGAAAGTAAG 
450
ATGTCTTCTT TTGCTATTGA TCAGTTTCCT CTAAGTTTTG AACATGGTAG 
500
TGGTCGCCTT TAG
550

>AT5G59780.1 longest ORF length:170
MTPQEERLVL ELHAKWGNRW SKIARKLPGR TDNEIKNYWR THMRKKAQEK 
50
KRPMSPTSSS SNCCSSSMTT TTSQDTGGSN GKMNQECEDG YYSMDDIWRE 
100
IDQSGANVIK PVKDNYYSEQ SCYLNFPPLA SPTWESSLES IWNMDADESK 
150
MSSFAIDQFP LSFEHGSGRL 
200