fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G59820 ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)

>AT5G59820.1 genomic map

>>Show CDS map




Uncut enzymes: AccIII(BspMII), AfeI, AgeI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AvrII, BaeI, BalI, BamHI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaI, BsaXI, BseRI, BsgI, BsmAI, BsmBI, BsmFI, BspEI, BspMI, BsrBI, BsrGI, BstAPI, BstNI, DraIII, DrdI, EarI, EciI, EcoNI, FauI, FokI, FseI, HaeII, HgaI, HphI, I-CeuI, I-SceI, KasI, MboII, MlyI, MnlI, MscI, NaeI, , NarI, NcoI, NgoMIV, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PflFI, PflMI, PleI, PmeI, PmlI, PshAI, PsiI, PspGI, PspOMI, PvuI, RsrII, SacII, SapI, SbfI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SphI, StuI, TliI, Tth111I, XhoI
Name Recognition sequence Cut positions
AatII GACGT|C 3639
Acc65I G|GTACC 1089, 5184
AccI GT|[AC][TG]AC 2387, 2592, 2753, 4124
AccII(FnuDII) CG|CG 2902, 3031, 3044, 3586, 3796, 4207, 4437, 4450, 5353, 6092
AciI C|CGC 652, 894, 960, 2191, 2901, 3585, 4674
AclI AA|CGTT 4185
AflII C|TTAAG 2879, 3789
AflIII A|CPuPyGT 2184, 3045, 3939, 4208, 4218, 4227
AhdI GACNNN|NNGTC 4304
AluI AG|CT 370, 1675, 2121, 2377, 3623, 3791, 4383, 4565, 4861, 4947, 5143, 5375, 5437, 5528, 5555, 5691, 6066, 6239
ApoI Pu|AATTPy 200, 290, 659, 720, 903, 1643, 1684, 1896, 1929, 2514, 2648, 3216, 3229, 3296, 4607, 4642, 4919, 4938, 4963, 4988, 5816, 5885, 5904, 6078, 6266
AseI AT|TAAT 1225, 1697, 2261, 2554, 5388
AvaI C|PyCGPuG 634
AvaII G|G[AT]CC 1291, 2435, 3948
BanI G|GPyPuCC 1089, 5184, 5932
BanII GPuGCPy|C 4467, 5144, 5692
BclI T|GATCA 1045, 1801, 4976
BfaI C|TAG 525, 608, 1424, 3131, 3175, 3191, 3219, 3533, 3572, 4166, 4493, 4531, 4657, 5373, 6064, 6167
BsaAI PyAC|GTPu 680, 3057, 3859
BsaBI GATNN|NNATC 1007, 3750
BsaHI GPu|CGPyC 3639
BsaJI C|CNNGG 557, 634, 4471, 5772, 6135
BsaWI [AT]|CCGG[AT] 1011
BsiEI CGPuPy|CG 515
BsiHKAI G[AT]GC[AT]|C 5144, 5225, 5692
BsiWI C|GTACG 678
BslI CCNNNNN|NNGG 159, 238, 2033, 2209, 3082, 3592, 4358
BsmI GAATGCN| 3599
BsoBI C|PyCGPuG 634
Bsp1286I G[GAT]GC[CAT]|C 4467, 5144, 5225, 5692, 5933
BspDI AT|CGAT 1235
BspHI T|CATGA 1798
BspT107I(HgiCI) G|G[TC][AG]CC 1089, 5184, 5932
BsrDI GCAATGNN| 1250, 2347, 2365
BsrFI Pu|CCGGPy 513, 534, 6160
BsrI ACTGGN| 357
BssHII G|CGCGC 5354
BssKI |CCNGG 556, 633, 1030, 2268, 6135
BssSI C|TCGTG 6002
BstBI TT|CGAA 1569
BstEII G|GTNACC 2214, 4267, 6192
BstF5I GGATGNN| 264, 4134, 4538
BstUI CG|CG 2902, 3031, 3044, 3586, 3796, 4207, 4437, 4450, 5353, 6092
BstXI CCANNNNN|NTGG 1145, 5037
BstYI Pu|GATCPy 873, 1180, 1588, 4523
BstZ17I GTA|TAC 2592, 2753
Bsu36I CC|TNAGG 4259, 5104
BtgI C|CPuPyGG 4471
BtrI CAC|GTC 2929, 3940
BtsI GCAGTGNN| 4500
Cac8I GCN|NGC 5354, 5374, 5567
Cfr10I [AG]|CCGG[TC] 513, 534, 6160
ClaI AT|CGAT 1235
DdeI C|TNAG 6, 110, 1481, 1487, 2089, 2119, 2313, 3477, 3609, 4258, 4526, 4771, 5068, 5103, 5435, 5945, 6283
DpnI GA-CH3|TC 349, 872, 938, 1007, 1044, 1179, 1236, 1468, 1587, 1800, 3025, 3034, 4048, 4116, 4198, 4522, 4975, 5009, 5170, 5759, 6021, 6164
DpnII |GATC 349, 872, 938, 1007, 1044, 1179, 1236, 1468, 1587, 1800, 3025, 3034, 4048, 4116, 4198, 4522, 4975, 5009, 5170, 5759, 6021, 6164
DraI TTT|AAA 284, 603, 1055, 1509, 1858, 1867, 1926, 3233, 3550, 3697, 4967, 5813, 5855, 6054
EaeI Py|GGCCPu 515, 2587
EagI C|GGCCG 515
EcoO109I PuG|GNCCPy 1292
EcoRI G|AATTC 3216, 4988
EcoRV GAT|ATC 4109, 5844
Fnu4HI GC|NGC 369, 393, 455, 1674, 3888, 4142, 4427, 5096, 5129, 5570
FspI TGC|GCA 5083
HaeIII GG|CC 9, 514, 2586
HhaI GCG|C 3587, 4436, 4451, 5082, 5352, 6093
HinP1I G|CGC 3587, 4436, 4451, 5082, 5352, 6093
HincII GTPy|PuAC 3636, 3642, 4124, 4188, 5016, 5431, 5504
HindIII A|AGCTT 4384, 5529
HinfI G|ANTC 4, 1473, 2272, 2399, 2661, 2807, 2874, 3496, 3745, 3765, 4276, 4528, 4552, 5041
HpaI GTT|AAC 5431
HpaII C|CGG 512, 516, 533, 555, 633, 1010, 1030, 2267, 4462, 6135, 6159, 6174
Hpy188I TCN|GA 503, 521, 1803, 2284, 3023, 3610, 4089, 4112, 4372, 4525, 4612, 4978, 6019, 6202, 6262
Hpy99I CG[AT]CG| 4125, 4297, 4335, 4808, 5640
HpyCH4III ACN|GT 1202, 1210, 1556, 3110, 4127, 4191, 4269, 4472, 4577, 5365, 5470, 5959, 6010, 6098
HpyCH4IV A|CGT 679, 2108, 2709, 2928, 2985, 3056, 3638, 3858, 3866, 3939, 4184, 4225, 4333, 4480, 4809, 5641
HpyCH4V TG|CA 269, 367, 442, 456, 564, 1228, 1672, 1832, 1984, 2302, 3599, 5138, 5192, 5489, 5549
KpnI GGTAC|C 1089, 5184
MboI |GATC 349, 872, 938, 1007, 1044, 1179, 1236, 1468, 1587, 1800, 3025, 3034, 4048, 4116, 4198, 4522, 4975, 5009, 5170, 5759, 6021, 6164
MfeI C|AATTG 5419
MluI A|CGCGT 3045, 4208
MseI T|TAA 283, 300, 602, 627, 728, 829, 914, 980, 1054, 1224, 1298, 1498, 1508, 1633, 1696, 1743, 1857, 1866, 1925, 1941, 1963, 1972, 2021, 2083, 2138, 2260, 2503, 2553, 2797, 2878, 2917, 3232, 3282, 3327, 3427, 3549, 3618, 3696, 3788, 3869, 4075, 4603, 4649, 4831, 4858, 4959, 4966, 5313, 5387, 5430, 5754, 5812, 5854, 6053, 6269
MslI CAPyNN|NNPuTG 54, 262, 408, 450, 1144, 3305, 3419, 5070
MspA1I C[AC]G|C[GT]G 1676
MspI C|CGG 512, 516, 533, 555, 633, 1010, 1030, 2267, 4462, 6135, 6159, 6174
MwoI GCNNNNN|NNGC 328, 366, 441, 1458, 2635, 4436, 4803, 5096, 5563, 6034, 6093
N.BstNBI GAGTCNNNN|N 2666, 4281, 4533
NciI CC|[CG]GG 556, 633, 1030, 2268, 6135
NdeI CA|TATG 2408, 2692, 4355
NheI G|CTAGC 5374
NlaIII CATG| 194, 204, 450, 1797, 1872, 1986, 2183, 2239, 3071, 4217, 4398, 4972, 5051, 5085, 5092, 5875, 6024
NlaIV GGN|NCC 1089, 2436, 3583, 4466, 5184, 5932
NsiI ATGCA|T 1229, 3600, 5490
NspI PuCATG|Py 1873, 2184, 4218
PciI A|CATGT 2184, 4218
PpuMI PuG|G[AT]CCPy 1292
PstI CTGCA|G 368, 1673
PvuII CAG|CTG 1676
RsaI GT|AC 677, 681, 1088, 1187, 1385, 2403, 2483, 3004, 3047, 5183, 5786
SacI GAGCT|C 5144, 5692
SalI G|TCGAC 4124
Sau3AI |GATC 349, 872, 938, 1007, 1044, 1179, 1236, 1468, 1587, 1800, 3025, 3034, 4048, 4116, 4198, 4522, 4975, 5009, 5170, 5759, 6021, 6164
Sau96I G|GNCC 1291, 2435, 3948
ScaI AGT|ACT 1386
ScrFI CC|NGG 556, 633, 1030, 2268, 6135
SfcI C|TPuPyAG 368, 1673, 1679, 5292
SmaI CCC|GGG 634
SmlI C|TPyPuAG 2879, 3789, 4557, 4993, 6234
SnaBI TAC|GTA 680
SpeI A|CTAGT 526, 1425
SspI AAT|ATT 889, 968, 2617, 3335, 3425, 4653, 5519, 5835
StyI C|C[AT][AT]GG 5772
SwaI ATTT|AAAT 1927
Taqƒ¿I T|CGA 1140, 1234, 1389, 1470, 1568, 2809, 3726, 4123, 5124, 5731
TfiI G|A[AT]TC 1473, 2272, 2874, 3496, 3745, 4552, 5041
TseI G|C[AT]GC 369, 455, 1674, 3888, 4427, 5096, 5129, 5570
Tsp45I |GT[CG]AC 1329, 2187, 2931, 3813, 3911, 3928, 4136, 4266, 4278, 4475, 5074, 5362, 5962
Tsp509I |AATT 63, 199, 276, 289, 388, 576, 658, 698, 719, 745, 768, 902, 946, 1222, 1500, 1565, 1631, 1642, 1683, 1698, 1895, 1928, 1935, 1943, 1976, 2006, 2072, 2393, 2513, 2534, 2555, 2572, 2647, 2763, 2792, 2799, 3209, 3215, 3228, 3295, 3431, 3438, 4147, 4546, 4606, 4641, 4833, 4918, 4937, 4957, 4962, 4987, 5392, 5418, 5508, 5628, 5663, 5728, 5815, 5884, 5903, 6077, 6142, 6183, 6213, 6265, 6299
TspRI NNCA[CG]TGNN| 357, 4500, 5072
XbaI T|CTAGA 3132, 3192, 3220, 3534, 3573, 4167, 4658
XcmI CCANNNNN|NNNNTGG 2712, 4363
XmaI C|CCGGG 634
XmnI GAANN|NNTTC 891, 1026, 1397, 3486


Click here to view TAIR data

>AT5G59820 genomic sequence (4101-4589,) length:6315
TTTTGACTCA GGCCACACAC cttcatcaac atacatattt tatatcattc 
50
ataactatga aagcaattat gatgaccaaa gcataccctt gttttgagat 
100
ttacCTGTGT CTAAGTTAGC GATGATTGTA TCCTCTCCGT ATCCTGCTTT 
150
ATTCCAAAGA GAGGACTTGT GAACAACACC ATTTTTCGCA AGGAGCATGA 
200
AATTCCATGA ATGAGTGGTA TGAAGTTTTC TTCCTTTGTT GGGGAATACA 
250
GAGACTACAT CAGGATGCTc tgcatacaat tattttaaaa aatttgttag 
300
gttaaactaa aaggattgag aagcatcaaa agcagaatat gaggtttgat 
350
gatctcacTG GCGATTTCTG CAGCTTCATT TTCGTCAAGA ATTGCGGCGA 
400
AGCCATTGAT ATGTCTCTTG TATGAGTAAA AGATGGCTTC TTTTGCATTC 
450
TCATGGctgc aatagagaag gcagttagtt tcttggtgtg tgtataagaa 
500
aactcggact aaaccggccg gtcggactag taaaccggca gtccaatagt 
550
aagtaaccgg ggcattgcac taaactcaat ttgggtgaaa ctaataatac 
600
tttttaaacc tagattttag tccctcgctt aaacccggga aaaaaacaat 
650
gtcccgcaaa atttccacga acagcctcgt acgtaccaaa tgaaatccta 
700
atttttttgt ttcggtttga aattcaacat taaaaatgat tattctaatt 
750
tttcttttta cttacctcta attgagtttg gttcaagttg tgttttacta 
800
aacacagatt acttttttgt tcaaatacat ttaacaaaga ttttcttaca 
850
aaaaacatca atgtcatatt agagatccag cgatttgaaa tatttccgca 
900
aaaaattcaa tgttattaac ctaatatgtc atattagatg atccagcaat 
950
tcaaaatact tccgcaaaat attcaatgtc attaacctaa tatgtcatat 
1000
tagatattga tccggtgatt agaaatactt cccggtttgc tatttgatca 
1050
aatctttaaa acattggttt ggcataaata ggagtaatgg tacCTTCCAA 
1100
CGAAAGAGGC GAGAAAAGTG CGATGTGAGT GAGCAACACC ATCGAGATGG 
1150
GCAGAAGAGA TTTGAGGAAG ATGGGCGTGA GATCCCAAGT ACACTATGTA 
1200
GGActgtaac acagtaggaa acaaattaat gcatatcgat cttacgagca 
1250
atgtatatag aaagtgagtt acataagaaa aaagagagag aggacCTTTT 
1300
TAAGAGCAAA AGCAGGAGAG AAAAAGAGAG TGACGAGGAG AAGAAGAGAT 
1350
GATAAACTTT GGAGGCTCAT TTTGTTTGAG TATTGAGTAC TCGAATATCT 
1400
TCTCGTCATA CTCATataca aaatactagt tctccataaa tctccctctc 
1450
tcgctatatt tgctaaatag atcgaatcac gctcagtctc agtctcaact 
1500
taattacttt taaagtttgt tgagtgattt cagccagaac tctatctctt 
1550
ccttcaactg ttatctaatt cgaaaaaaaa ggtaagagga tcttcataat 
1600
cttctttcca tatttatctc cctattattt ggaattaaac taaaattttg 
1650
actttgtggg tgatttgttt gactgcagct gtagaatttt gtttatatta 
1700
attggttgta gttgtaagtt tttgaatata gatattttat tctattaaat 
1750
atggtttgta aagttagtaa ctgacagatt gtgccaaatg taaactttca 
1800
tgatcagatg tttattatct ctttatgtgg tattgcaaac ttacacttat 
1850
gttttatttt aaaatgttta aagcatgtaa tcataagtga aaactaaatt 
1900
ttttattgaa aaatatctta taggatttaa attttcaatt acttaattag 
1950
aagttagtat attcttaact cacttaaaat tagtttgcat gaagtaaact 
2000
aatgtgtaat ttatctacat ttttaaccct acgaacggag gtgtgttgaa 
2050
ccttttaggc tcgtaaagaa tataatttga tgatttaatc ttagtataaa 
2100
caacataaaa cgtaactaac ttagctatct ttctacattt taacccctat 
2150
gaacaagagg tgggttgaac ctattaggct attacatgtg acccgctaaa 
2200
tagccaaatg tgggtaacca cctcaaatca ctacaaggct catgtcaaac 
2250
tctcattacc attaatatcc gggaatcaag tttatcagaa aatgagattg 
2300
tcttgcattc aaactaagaa aagaaaaaga aaaaaaagca agaagcaatg 
2350
gagatgagta acgcaatgaa tgagtaatag ctcaatgtct acataattgg 
2400
actcgtacat atgaactcaa taaaataaag caaatggacc cgatttgaga 
2450
ccagtaatgg ttttgaaatc atatatttcc aagcgtacca aaatacactt 
2500
acgattaaaa cttgaatttt ttttggcaac aaacgaatta tatttttgtt 
2550
agtattaatt attgtattca acgaattaca tttgattggc cgtatactct 
2600
ggaagtgtgt aagtataata ttttctttgg cttacaaagc aaaacaaaaa 
2650
tttgatggag agagtcaaac aaaaaaacaa aagaagtagg tcatatgttt 
2700
atccattcat acgttggttg gtaatcctaa aaaccaacaa acaatcatat 
2750
atgtatactt gtccaattat gtaaactact ccattgataa tataattgtt 
2800
aattattgac tcgacttatc tactgattat gaaactacca acaaatgaag 
2850
aaagtaaagg gagtgtgaaa acaagaatct taaggtataa cgaagatttg 
2900
ttccgcgtgg aaaaggcatt aaaagtgcca cgtcactctc tctttttatt 
2950
ttatgatttt cgtatctctt cttctacttg cttcccacgt ttccatcaag 
3000
tttccgtaca tatcttcttg ttatctgatc cacgcgatct ttcaacgcgt 
3050
acttttcacg tatttgtgtt gtcatgcctt tgctgggatt gtgttagatg 
3100
ctcattgctg acggtagttt ttagagaaca ttctagaaag aaactatttt 
3150
tctaacaaaa ccacgaactt tgttttctag ttattccact ttctagaata 
3200
cacctgacca aattagaatt ctagaaatga attttaaata aaccaaaaca 
3250
cctaaacgaa aagcaaacca taggtttttg gttttaacat atttcaaatt 
3300
cataaaagtg aaaccaacct acaccatatt aaccaatatt tattagagtt 
3350
tttatatgtt ttatgatatt gttcaaaact tcaaaagaga tttattcata 
3400
taacatacct ataccatacc aatgaatatt aaaattatga attagtatcc 
3450
ttatattata tgaagtcaat caaaaaactt agaagcattt caaacggaat 
3500
caaaccattc atatatgaag tattattatt atatctagaa ggtgttgatt 
3550
ttaaactatt ccgtataata tatctagaag acggctccgc gcgtggggaa 
3600
tgcatcaaac tcagagagtt taatagcttt ttttggttga cgtcaactac 
3650
tcaaaagagt ttagtttttg atgtgtatat atccaaataa aatatcttta 
3700
aaaagaaaat aataataata aatggtttcg agaaaacacg aggaagattc 
3750
tcatccaacc gaaacgactc tttcgttttt agtagtctct taagctacgc 
3800
ggtgtcgcaa atcgtgacca cataacccgt tttttccttc ttttacccct 
3850
tatctttcca cgtatttacg ttaataccta cactcttcgc tgccacttcc 
3900
ttacccacca agtcacaagg gtatattcgt cactttccac acgtctttgg 
3950
tccacacaaa ctcggtatct atatatagtt cccaaacgga cacgaacaca 
4000
tcatcacaac tactatcaca ccaaactcaa aaaacacaaa ccacaagagg 
4050
atcatttcat tttttattgt ttcgttttaa tcatcatcat cagaagaaaa 
4100
ATGGTTGCGA TATCGGAGAT CAAGTCGACG GTGGATGTCA CGGCGGCGAA 
4150
TTGTTTGATG CTTTTATCTA GAGTTGGACA AGAAAACGTT GACGGTGGCG 
4200
ATCAAAAACG CGTTTTCACA TGTAAAACGT GTTTGAAGCA GTTTCATTCG 
4250
TTCCAAGCCT TAGGAGGTCA CCGTGCGAGT CACAAGAAGC CTAACAACGA 
4300
CGCTTTGTCG TCTGGATTGA TGAAGAAGGT GAAAACGTCG TCGCATCCTT 
4350
GTCCCATATG TGGAGTGGAG TTTCCGATGG GACAAGCTTT GGGAGGACAC 
4400
ATGAGGAGAC ACAGGAACGA GAGTGGGGCT GCTGGTGGCG CGTTGGTTAC 
4450
ACGCGCTTTG TTGCCGGAGC CCACGGTGAC TACGTTGAAG AAATCTAGCA 
4500
GTGGGAAGAG AGTGGCTTGT TTGGATCTGA GTCTAGGGAT GGTGGACAAT 
4550
TTGAATCTCA AGTTGGAGCT TGGAAGAACA GTTTATTGAt tttatttatt 
4600
ttccttaaat tttctgaata tatttgtttc tctcattctt tgaatttttc 
4650
ttaatattct agattataca tacatccgca gatttaggaa actttcatag 
4700
agtgtaatct tttctttctg taaaaatata ttttacttgt agcattggag 
4750
atttgttatg agattatctt acttagcatt tagtgaataa tctattagcc 
4800
tattttgccg acgtgaaaat accattttct atttaatttt gattacttat 
4850
caactactat taagctgtta ttttccccca tcacgaataa aaacaaccca 
4900
agaaatagat atttatttga atttgaaact tacctataaa tttagttgag 
4950
ctaatcaaaa ttaaatttta aagcatgatc agaagtggaa ttcttgagag 
5000
tgttgtttgt gatctgtcaa catcttctgt ccaaataaat ggattcaaag 
5050
aacatggttc aacaccatct cagtgtcacc tttgcgcatg gctcatgctg 
5100
ctcctaaggt aatatatgcc aatcttcgag cagcgaagat gcagagctca 
5150
ttggttctcc tgtaaggctg tgatcttgga aaaggtacca taatgcagtc 
5200
tttatctctt ccctaaacca atatgagcac atcaaaaaca ctctatacca 
5250
aatcaaatgc tgaaatgctc aaatatagaa aagatatgtc cctataggca 
5300
aacaagatgt attgttaagg ataatatgta tctccacaca agtagttgga 
5350
atagcgcgcc gagtgactgt gaggctagct tgaaaggatt aataattcca 
5400
atatctttac tatccactca attgttattt gttaacttag ctcttcttca 
5450
atccaagtaa agcatagccc accgtttcgt tagttctaaa tgcatctttt 
5500
atagtcaaca attacctcaa tattgtagaa gcttcatttg gattgttgat 
5550
tgcattagct tcaaaagcag gcagcctatt cacaaggaat gaaatatcac 
5600
atatcttcaa atctgtatct tttgtattca attttttagc cgacgtaaaa 
5650
tcttttacgc catcaatttc gttttatccc atttcatttt agagctcatt 
5700
agacgaatac ttttttacta ctttcatata attcgagtat catattagcc 
5750
cgacattaaa gatcataaaa accttgggga agtttaggta ctatttcaca 
5800
taataactaa actttaaatt ttagcatcat caataatatt gaagatatca 
5850
tctctttaaa aatgttgttt ttgtttcatg gtgaaaattt gataaaatag 
5900
tgaaaatttg ataaaatgaa aagaagaagt tggtgcccac aaactcttag 
5950
gggagatgaa cggtcacgat tagacatcac tcaacacagc gtaagataag 
6000
cctcgtggaa accgtaacat cagatcatgc gatttttgct ttatgctttt 
6050
ttttttaaaa agagcctagc tgaagcaaaa ttcgggtgct tctcgcgcac 
6100
cgtatatcat cacatccttc tccgttactt tcttccccgg agaaattacc 
6150
ctctccctta ccggcgatct agtttccggc tatcaattca ggtaaccaat 
6200
cttctgattt ctccaatttt cagccattcc aacctcaagg agctttttat 
6250
attcgttcgc tttcagaatt ttaacactct ttacttagcg attaggtttc 
6300
aatttcaaca atcta
6350