fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G60200 TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1)

>AT5G60200.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NdeI, NgoMIV, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Taqƒ¿I, TliI, TspRI, Tth111I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AccIII(BspMII) T|CCGGA 150
AluI AG|CT 153, 157, 443, 492, 518, 662
AseI AT|TAAT 751
AvaII G|G[AT]CC 733
BfaI C|TAG 155, 494
BlpI GC|TNAGC 447
BsaBI GATNN|NNATC 330
BsaHI GPu|CGPyC 372
BsaJI C|CNNGG 296, 478, 643
BsaWI [AT]|CCGG[AT] 150
BslI CCNNNNN|NNGG 300, 382
BspEI T|CCGGA 150
BsrDI GCAATGNN| 60
BsrFI Pu|CCGGPy 369
BssKI |CCNGG 20, 477
BstAPI GCANNNN|NTGC 250
BstF5I GGATGNN| 25
BstNI CC|[AT]GG 20
BtgI C|CPuPyGG 296, 643
Cac8I GCN|NGC 156
Cfr10I [AG]|CCGG[TC] 369
DdeI C|TNAG 162, 226, 282, 351, 441, 446
DpnI GA-CH3|TC 2, 324, 437, 614, 704
DpnII |GATC 2, 324, 437, 614, 704
DrdI GACNNNN|NNGTC 388
Fnu4HI GC|NGC 307, 339, 399, 601
HaeIII GG|CC 138
HinfI G|ANTC 180, 625, 714
HpaII C|CGG 149, 253, 310, 368, 476
Hpy188I TCN|GA 352, 440, 507, 531, 707
Hpy99I CG[AT]CG| 380
HpyCH4III ACN|GT 89, 217
HpyCH4IV A|CGT 172
HpyCH4V TG|CA 121, 242, 340
MboI |GATC 2, 324, 437, 614, 704
MseI T|TAA 408, 750, 764
MslI CAPyNN|NNPuTG 23, 295
MspA1I C[AC]G|C[GT]G 603
MspI C|CGG 149, 253, 310, 368, 476
MwoI GCNNNNN|NNGC 54, 152, 241, 582
N.BstNBI GAGTCNNNN|N 630
NciI CC|[CG]GG 477
NcoI C|CATGG 643
NheI G|CTAGC 156
NlaIII CATG| 249, 535, 642, 698
PsiI TTA|TAA 39
PspGI |CC[AT]GG 20
Sau3AI |GATC 2, 324, 437, 614, 704
Sau96I G|GNCC 733
ScrFI CC|NGG 20, 477
SfcI C|TPuPyAG 216
StyI C|C[AT][AT]GG 643
TfiI G|A[AT]TC 714
TseI G|C[AT]GC 307, 339, 601
Tsp45I |GT[CG]AC 132
Tsp509I |AATT 35, 752
XcmI CCANNNNN|NNNNTGG 30
XmnI GAANN|NNTTC 391


Click here to view TAIR data

>AT5G60200.1 length:774
ATGGATCATT TGTTACAACA CCAGGATGTT TTTGGGAATT ATAACAAAGC 
50
AAGAGAAGCA ATGGGACTAT CATATTCATC AAACCCAACA CCGTTAGATA 
100
ACGACCAGAA GAAACCTTCT CCTGCAACGG CTGTGACAAG GCCACAGCCT 
150
CCGGAGCTAG CTCTCAGGTG TCCACGTTGC GACTCAACAA ACACAAAGTT 
200
TTGTTACTAC AACAACTACA GTCTCACTCA GCCTCGCTAC TTCTGCAAAT 
250
CATGCCGGAG ATATTGGACT AAAGGTGGAA CTCTAAGGAA CATCCCCGTG 
300
GGTGGAGGCT GCCGGAAAAA CAAACGATCC ACATCTTCGG CTGCAAGAAG 
350
CCTCAGAACC ACTCCAGAAC CGGCGTCCCA CGACGGGAAA GTCTTCTCGG 
400
CGGCAGGTTT TAATGGGTAT AGTAACAATG AACATATTGA TCTGAGCTTA 
450
GCCTTTGCCT TGCTGAACAA ACAACATCCG GGGAGTTCTT CACAGCTAGG 
500
GTTTCATTCA GAACTCGGTA GCTCTCATCA GTCTGACATG GAAGGTATGT 
550
TTGGGACAAG CCAACAAAAA GAGAACGCTA CTTATGCGTT TGGTAACGGG 
600
AGCAGCGGTT TGGGTGATCC AAGCAGAGTC TTATGGGGAT TTCCATGGCA 
650
GATGAATGGA GAGAGCTTTG GAATGATGAA CATAGGAGGA GGTGGTGGTC 
700
ATGTAGATCA GATTGATTCA GGGAGAGAGA TGTGGACCAA TATGAACTAC 
750
ATTAATTCTG GTGCTTTAAT GTAG
800

>AT5G60200.1 longest ORF length:257
MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP 
50
PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV 
100
GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL 
150
AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG 
200
SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY 
250
INSGALM
300