Locus |
Common name |
Short description |
AT5G60200 |
TMO6, AtDof5,3 |
TARGET OF MONOPTEROS 6 (.1) |
>AT5G60200.1 CDS map
>>Show genomic map

Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AciI, AclI, AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, ApoI, AscI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BglII, BmrI, BpmI, BsaAI, BsaI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrGI, BsrI, BssHII, BssSI, BstBI, BstEII, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NdeI, NgoMIV, NlaIV, NotI, NruI, NsiI, NspI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PspOMI, PstI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, Taqƒ¿I, TliI, TspRI, Tth111I, XbaI, XhoI, XmaI
Name |
Recognition sequence |
Cut positions |
AccIII(BspMII)
| T|CCGGA |
150 |
AluI
| AG|CT |
153, 157, 443, 492, 518, 662 |
AseI
| AT|TAAT |
751 |
AvaII
| G|G[AT]CC |
733 |
BfaI
| C|TAG |
155, 494 |
BlpI
| GC|TNAGC |
447 |
BsaBI
| GATNN|NNATC |
330 |
BsaHI
| GPu|CGPyC |
372 |
BsaJI
| C|CNNGG |
296, 478, 643 |
BsaWI
| [AT]|CCGG[AT] |
150 |
BslI
| CCNNNNN|NNGG |
300, 382 |
BspEI
| T|CCGGA |
150 |
BsrDI
| GCAATGNN| |
60 |
BsrFI
| Pu|CCGGPy |
369 |
BssKI
| |CCNGG |
20, 477 |
BstAPI
| GCANNNN|NTGC |
250 |
BstF5I
| GGATGNN| |
25 |
BstNI
| CC|[AT]GG |
20 |
BtgI
| C|CPuPyGG |
296, 643 |
Cac8I
| GCN|NGC |
156 |
Cfr10I
| [AG]|CCGG[TC] |
369 |
DdeI
| C|TNAG |
162, 226, 282, 351, 441, 446 |
DpnI
| GA-CH3|TC |
2, 324, 437, 614, 704 |
DpnII
| |GATC |
2, 324, 437, 614, 704 |
DrdI
| GACNNNN|NNGTC |
388 |
Fnu4HI
| GC|NGC |
307, 339, 399, 601 |
HaeIII
| GG|CC |
138 |
HinfI
| G|ANTC |
180, 625, 714 |
HpaII
| C|CGG |
149, 253, 310, 368, 476 |
Hpy188I
| TCN|GA |
352, 440, 507, 531, 707 |
Hpy99I
| CG[AT]CG| |
380 |
HpyCH4III
| ACN|GT |
89, 217 |
HpyCH4IV
| A|CGT |
172 |
HpyCH4V
| TG|CA |
121, 242, 340 |
MboI
| |GATC |
2, 324, 437, 614, 704 |
MseI
| T|TAA |
408, 750, 764 |
MslI
| CAPyNN|NNPuTG |
23, 295 |
MspA1I
| C[AC]G|C[GT]G |
603 |
MspI
| C|CGG |
149, 253, 310, 368, 476 |
MwoI
| GCNNNNN|NNGC |
54, 152, 241, 582 |
N.BstNBI
| GAGTCNNNN|N |
630 |
NciI
| CC|[CG]GG |
477 |
NcoI
| C|CATGG |
643 |
NheI
| G|CTAGC |
156 |
NlaIII
| CATG| |
249, 535, 642, 698 |
PsiI
| TTA|TAA |
39 |
PspGI
| |CC[AT]GG |
20 |
Sau3AI
| |GATC |
2, 324, 437, 614, 704 |
Sau96I
| G|GNCC |
733 |
ScrFI
| CC|NGG |
20, 477 |
SfcI
| C|TPuPyAG |
216 |
StyI
| C|C[AT][AT]GG |
643 |
TfiI
| G|A[AT]TC |
714 |
TseI
| G|C[AT]GC |
307, 339, 601 |
Tsp45I
| |GT[CG]AC |
132 |
Tsp509I
| |AATT |
35, 752 |
XcmI
| CCANNNNN|NNNNTGG |
30 |
XmnI
| GAANN|NNTTC |
391 |
Click here to view TAIR data
>AT5G60200.1 length:774
ATGGATCATT TGTTACAACA CCAGGATGTT TTTGGGAATT ATAACAAAGC | 50 |
AAGAGAAGCA ATGGGACTAT CATATTCATC AAACCCAACA CCGTTAGATA | 100 |
ACGACCAGAA GAAACCTTCT CCTGCAACGG CTGTGACAAG GCCACAGCCT | 150 |
CCGGAGCTAG CTCTCAGGTG TCCACGTTGC GACTCAACAA ACACAAAGTT | 200 |
TTGTTACTAC AACAACTACA GTCTCACTCA GCCTCGCTAC TTCTGCAAAT | 250 |
CATGCCGGAG ATATTGGACT AAAGGTGGAA CTCTAAGGAA CATCCCCGTG | 300 |
GGTGGAGGCT GCCGGAAAAA CAAACGATCC ACATCTTCGG CTGCAAGAAG | 350 |
CCTCAGAACC ACTCCAGAAC CGGCGTCCCA CGACGGGAAA GTCTTCTCGG | 400 |
CGGCAGGTTT TAATGGGTAT AGTAACAATG AACATATTGA TCTGAGCTTA | 450 |
GCCTTTGCCT TGCTGAACAA ACAACATCCG GGGAGTTCTT CACAGCTAGG | 500 |
GTTTCATTCA GAACTCGGTA GCTCTCATCA GTCTGACATG GAAGGTATGT | 550 |
TTGGGACAAG CCAACAAAAA GAGAACGCTA CTTATGCGTT TGGTAACGGG | 600 |
AGCAGCGGTT TGGGTGATCC AAGCAGAGTC TTATGGGGAT TTCCATGGCA | 650 |
GATGAATGGA GAGAGCTTTG GAATGATGAA CATAGGAGGA GGTGGTGGTC | 700 |
ATGTAGATCA GATTGATTCA GGGAGAGAGA TGTGGACCAA TATGAACTAC | 750 |
ATTAATTCTG GTGCTTTAAT GTAG | 800 |
>AT5G60200.1 longest ORF length:257
MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP | 50 |
PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV | 100 |
GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL | 150 |
AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG | 200 |
SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY | 250 |
INSGALM | 300 |
|