fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G60450 ARF4 auxin response factor 4 (.1)

>AT5G60450.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HindIII, HpaI, KpnI, NotI, PacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
BamHI G|GATCC 2121
EcoRI G|AATTC 876
NcoI C|CATGG 666, 1270, 2191
NdeI CA|TATG 523
NheI G|CTAGC 1692
PstI CTGCA|G 348
PvuII CAG|CTG 1637, 1850
SacI GAGCT|C 646
StyI C|C[AT][AT]GG 666, 709, 1201, 1255, 1270, 1570, 2191
XhoI C|TCGAG 1983


Click here to view TAIR data

>AT5G60450.1 length:2367
ATGGAATTTG ACTTGAATAC TGAGATTGCG GAGGTGGAAG AGGAGGAGAA 
50
TGATGATGTA GGAGTAGGAG TAGGAGGAGG AACAAGAATT GACAAGGGTA 
100
GGCTTGGAAT TTCACCATCT TCTTCTTCTT CATGCTCTTC CGGATCATCA 
150
TCGTCATCAT CTTCTACAGG CTCTGCATCT TCCATTTACT CTGAGCTTTG 
200
GCATGCTTGT GCTGGTCCTC TCACTTGTCT TCCCAAGAAA GGCAATGTAG 
250
TTGTCTATTT CCCTCAAGGT CATTTGGAGC AAGATGCTAT GGTTTCATAT 
300
TCGTCTCCTC TTGAAATCCC CAAATTTGAC CTTAATCCCC AAATCGTCTG 
350
CAGGGTGGTT AATGTCCAGT TGCTTGCTAA TAAGGACACC GATGAGGTCT 
400
ACACTCAAGT CACTCTGCTT CCACTTCAAG AGTTTTCGAT GCTAAATGGG 
450
GAGGGGAAAG AGGTCAAGGA GTTAGGAGGG GAGGAAGAGA GGAACGGAAG 
500
CTCATCCGTC AAGCGGACAC CTCATATGTT CTGTAAAACC TTAACAGCGT 
550
CTGACACAAG CACACATGGA GGCTTCTCTG TACCTAGAAG AGCCGCTGAA 
600
GATTGTTTTG CTCCTCTTGA CTACAAACAA CAGAGGCCAT CTCAAGAGCT 
650
CATTGCAAAG GACCTCCATG GAGTAGAGTG GAAGTTTCGC CATATCTATA 
700
GAGGTCAACC AAGGAGGCAT CTACTCACCA CTGGTTGGAG TATCTTTGTC 
750
AGTCAAAAGA ATCTCGTCTC TGGTGATGCG GTTCTCTTTC TGAGAGACGA 
800
AGGAGGAGAG CTGAGATTAG GAATCAGAAG AGCAGCACGG CCAAGAAATG 
850
GACTTCCTGA CTCAATCATT GAGAAGAATT CATGTTCAAA CATTCTGTCT 
900
CTTGTGGCTA ATGCTGTATC TACAAAAAGC ATGTTTCATG TGTTCTACAG 
950
TCCACGAGCG ACGCATGCAG AGTTTGTGAT TCCTTATGAG AAGTATATCA 
1000
CAAGCATCAG GAGTCCTGTT TGCATAGGCA CAAGATTTAG AATGCGATTT 
1050
GAAATGGACG ATTCTCCTGA GAGAAGATGC GCTGGTGTAG TGACTGGAGT 
1100
CTGTGACTTG GACCCGTATA GGTGGCCAAA CTCTAAATGG AGGTGCTTGT 
1150
TGGTGCGATG GGATGAGTCT TTTGTGAGTG ATCATCAAGA AAGAGTTTCA 
1200
CCTTGGGAGA TTGATCCCTC GGTTTCTCTC CCACACTTGA GCATTCAGTC 
1250
ATCTCCAAGG CCTAAAAGGC CATGGGCAGG TTTACTGGAT ACTACCCCAC 
1300
CCGGAAACCC CATAACAAAA AGGGGTGGTT TTTTGGACTT TGAGGAGTCG 
1350
GTTAGACCCT CTAAGGTCTT GCAAGGTCAA GAAAATATAG GTTCTGCATC 
1400
ACCCTCACAG GGGTTTGATG TTATGAACCG CCGGATACTG GATTTTGCGA 
1450
TGCAGTCTCA TGCAAATCCA GTTCTTGTGT CGAGTAGAGT CAAGGATCGA 
1500
TTTGGTGAGT TTGTAGATGC TACTGGCGTG AACCCAGCTT GTTCAGGTGT 
1550
TATGGACCTG GATAGGTTTC CAAGGGTCTT GCAAGGTCAA GAAATTTGCT 
1600
CGCTTAAATC ATTCCCGCAA TTTGCTGGTT TCAGTCCAGC TGCTGCTCCT 
1650
AATCCCTTTG CTTACCAAGC CAACAAGTCA AGTTACTATC CGCTAGCTTT 
1700
GCATGGGATT AGGAGCACTC ATGTTCCGTA TCAGAATCCA TACAATGCGG 
1750
GAAACCAATC CTCGGGTCCC CCTTCACGTG CAATAAACTT TGGTGAAGAG 
1800
ACTAGAAAGT TTGATGCACA AAATGAAGGT GGCCTACCAA ATAATGTTAC 
1850
AGCTGATTTG CCATTCAAGA TTGATATGAT GGGAAAACAG AAAGGCAGTG 
1900
AGTTGAATAT GAATGCTTCA TCAGGATGTA AACTTTTCGG ATTCTCCTTA 
1950
CCAGTGGAGA CACCTGCATC TAAGCCGCAA AGCTCGAGCA AAAGAATCTG 
2000
TACAAAGGTT CACAAGCAAG GAAGCCAAGT GGGGAGAGCT ATTGATTTGT 
2050
CGCGACTTAA CGGGTATGAT GATCTCCTTA TGGAGCTTGA ACGGCTGTTC 
2100
AACATGGAAG GGCTTCTCAG GGATCCTGAA AAAGGATGGA GGATCTTATA 
2150
TACTGATAGT GAGAACGATA TGATGGTCGT TGGCGATGAT CCATGGCATG 
2200
ATTTCTGCAA TGTGGTGTGG AAGATACACT TATACACGAA AGAGGAAGTG 
2250
GAGAATGCGA ATGACGATAA CAAGAGTTGT TTAGAGCAAG CTGCTCTCAT 
2300
GATGGAAGCA TCAAAGTCAT CTTCTGTGAG CCAGCCTGAT TCTTCTCCTA 
2350
CAATCACTAG GGTTTGA
2400

>AT5G60450.1 longest ORF length:788
MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS 
50
SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY 
100
SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG 
150
EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE 
200
DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV 
250
SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS 
300
LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF 
350
EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS 
400
PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES 
450
VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR 
500
FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP 
550
NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE 
600
TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL 
650
PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF 
700
NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV 
750
ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV
800