fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G60470 C2H2 and C2HC zinc fingers superfamily protein (.1)

>AT5G60470.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, HindIII, HpaI, KpnI, NdeI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, SpeI, XbaI
Name Recognition sequence Cut positions
EcoRV GAT|ATC 456
NcoI C|CATGG 265
PstI CTGCA|G 76
StyI C|C[AT][AT]GG 265, 363
XhoI C|TCGAG 356


Click here to view TAIR data

>AT5G60470.1 length:1353
ATGACCGCCT CTCATTCTCT AGCTTTGTCC ATGACCAAGA GCACATCACC 
50
CCTAATCCTT ACCCTAACTC TCAGCCTGCA GCCTCCACTA AAACACCCAA 
100
GAAAAAGAGA AACCTTCCAG GAAATCCAGG CATATCCAAA TGCAGAAGTC 
150
ATCTCTCTAT CTCCAAAATC CCTCATGGCG ACAAATCGGT TCTTTTGTGA 
200
AATTTGTAAC AAGGGGTTTC AGAGAGAACA GAACCTTCAG CTCCACAAAA 
250
GAGGCCACAA CCTGCCATGG AAGCTGAAGC AGAAAACGAA CAAGAATCAG 
300
GTGAAGAAGA AAGTTTATAT ATGCCCTGAG AAGAGTTGCG TCCATCATGA 
350
TCCAGCTCGA GCCCTAGGAG ACCTTACTGG AATAAAGAAG CACTTTAGCA 
400
GGAAACATGG AGAGAAGAAG TGGAAATGCG ATAAGTGTTC CAAGAAGTAT 
450
GCTGTGATAT CCGATTGGAA AGCTCATAAC AAGATTTGTG GTAGCAGAGA 
500
GTTTAGATGT GATTGTGGTA CTCTTTTCTC CAGGAAGGAC AGTTTCATCT 
550
CACATAGATC CTTCTGTGAT GTCTTAGCTG AAGAAAGTTC TAAATTCTTC 
600
TCAGTTCCTT CACCATTAGC CGCCAATTCG ACCATCGCCA CTGTCACTGA 
650
TACCAACAAT CCAATTCTCA TTCAATCACA ATTGGATCAA TCTTCCACAG 
700
GTACGGCCGA TCTTAACGTC AACAACAATC ACACCACCCT ATTTGGACAA 
750
AAGTTCACCA ACTCCAACCC AACCCAACAA CAACCCAATG CTTTGGCGTT 
800
GTCCTCACCA CCATCACCTC GTAGTACATC TGATTCGGTT CATAATCTAT 
850
GGAAGTTACA AGAAGAGGAA TGTGCACACC AGTGGTTACT CAATGAATAT 
900
ATGAACAATA ACAAAAACAT ATTCCATAAG GGAATATTCA AGAATCAAGA 
950
AGATGAGATA AAGAAGGGAA ATATCTACAG CGGCTCAAAC CCAACCGATG 
1000
GAAACATAGC ATCCTTGTTC TCGTATAATC AAGAAGCAGT GAATATGGCT 
1050
TCATTTTCGG CAACAACATT GCTTCAAAAG GTAGCTCAAA CGGGAACACC 
1100
ATCAAGCTCC GAAACTAGCA CCACCATGTT TGGGCAAATG ACTTCCTCCA 
1150
TCTTCAACAA TACGATGCTA AACTCCTATT GTTTAACGGC GAAGAATAAT 
1200
GAAGAAGAGT TGACCAGAGA CTTTCTTGGT GTGGGAAGTA GTGAGGACCA 
1250
ACAACGTCTA CATCGTCATC GCTTCCCATC AAGCGTGCCA TTGACGGCGA 
1300
ACCATGATAT TCCCAAGTTG GCCGCAACCA TTGTAGGCAG GAAGCAACCA 
1350
TAG
1400

>AT5G60470.1 longest ORF length:450
MTASHSLALS MTKSTSPLIL TLTLSLQPPL KHPRKRETFQ EIQAYPNAEV 
50
ISLSPKSLMA TNRFFCEICN KGFQREQNLQ LHKRGHNLPW KLKQKTNKNQ 
100
VKKKVYICPE KSCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY 
150
AVISDWKAHN KICGSREFRC DCGTLFSRKD SFISHRSFCD VLAEESSKFF 
200
SVPSPLAANS TIATVTDTNN PILIQSQLDQ SSTGTADLNV NNNHTTLFGQ 
250
KFTNSNPTQQ QPNALALSSP PSPRSTSDSV HNLWKLQEEE CAHQWLLNEY 
300
MNNNKNIFHK GIFKNQEDEI KKGNIYSGSN PTDGNIASLF SYNQEAVNMA 
350
SFSATTLLQK VAQTGTPSSS ETSTTMFGQM TSSIFNNTML NSYCLTAKNN 
400
EEELTRDFLG VGSSEDQQRL HRHRFPSSVP LTANHDIPKL AATIVGRKQP 
450