fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G61430 ANAC100, ATNAC5 NAC domain containing protein 100 (.1)

>AT5G61430.1 CDS map

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Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AccIII(BspMII), AclI, AfeI, AflII, AflIII, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BfaI, BglI, BglII, BlpI, BmrI, BpmI, BsaBI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspEI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstZ17I, Bsu36I, BtrI, BtsI, Cac8I, ClaI, DraIII, DrdI, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HincII, HindIII, HpaI, HphI, Hpy99I, I-CeuI, I-SceI, KasI, KpnI, MboII, MluI, MlyI, MnlI, MscI, MslI, MspA1I, NaeI, , NarI, NdeI, NgoMIV, NheI, NotI, NruI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacII, SalI, SapI, SbfI, ScaI, SexAI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, SwaI, TliI, Tsp45I, XbaI, XhoI, XmaI
Name Recognition sequence Cut positions
AccI GT|[AC][TG]AC 631
AciI C|CGC 456
AgeI A|CCGGT 250, 627, 978
AluI AG|CT 122, 130, 136, 373
ApoI Pu|AATTPy 430, 925
AvaII G|G[AT]CC 975
BanII GPuGCPy|C 374, 786
BsaAI PyAC|GTPu 634
BsaJI C|CNNGG 52, 172, 184, 321, 669
BsaWI [AT]|CCGG[AT] 250, 627, 880, 978
BsiEI CGPuPy|CG 296
BsiHKAI G[AT]GC[AT]|C 374
BslI CCNNNNN|NNGG 107, 286
Bsp1286I G[GAT]GC[CAT]|C 374, 637, 786
BsrFI Pu|CCGGPy 250, 280, 627, 978
BsrI ACTGGN| 398, 973
BssKI |CCNGG 51, 298, 764, 788
BstF5I GGATGNN| 189, 342
BstNI CC|[AT]GG 51, 764
BstYI Pu|GATCPy 515, 957
BtgI C|CPuPyGG 172, 184
Cfr10I [AG]|CCGG[TC] 250, 280, 627, 978
DdeI C|TNAG 128, 754, 809
DpnI GA-CH3|TC 514, 659, 712, 826, 956, 983
DpnII |GATC 514, 659, 712, 826, 956, 983
DraI TTT|AAA 156
EcoRV GAT|ATC 907
Fnu4HI GC|NGC 694
HinfI G|ANTC 527, 538, 591, 737, 776, 945
HpaII C|CGG 249, 279, 297, 626, 788, 879, 977
Hpy188I TCN|GA 165, 386, 535, 550, 915
HpyCH4III ACN|GT 938
HpyCH4IV A|CGT 633
HpyCH4V TG|CA 405, 479
MboI |GATC 514, 659, 712, 826, 956, 983
MfeI C|AATTG 684
MseI T|TAA 155, 254, 561, 584, 705
MspI C|CGG 249, 279, 297, 626, 788, 879, 977
MwoI GCNNNNN|NNGC 276, 694
N.BstNBI GAGTCNNNN|N 532
NciI CC|[CG]GG 298, 788
NcoI C|CATGG 172, 184
NlaIII CATG| 171, 183, 407, 818, 895
NlaIV GGN|NCC 553, 673
NsiI ATGCA|T 406
NspI PuCATG|Py 819
PflFI GACN|NNGTC 848
PspGI |CC[AT]GG 51, 764
RsaI GT|AC 412
SacI GAGCT|C 374
Sau3AI |GATC 514, 659, 712, 826, 956, 983
Sau96I G|GNCC 975
ScrFI CC|NGG 51, 298, 764, 788
SfcI C|TPuPyAG 363, 781
SmlI C|TPyPuAG 950
StyI C|C[AT][AT]GG 172, 184, 669
Taqƒ¿I T|CGA 524, 710, 828
TfiI G|A[AT]TC 538, 591, 737, 776, 945
TseI G|C[AT]GC 694
Tsp509I |AATT 429, 683, 924, 1001
TspRI NNCA[CG]TGNN| 904
Tth111I GACN|NNGTC 848
XcmI CCANNNNN|NNNNTGG 501
XmnI GAANN|NNTTC 543


Click here to view TAIR data

>AT5G61430.1 length:1011
ATGGAGACTT TTTGTGGGTT TCAAAAGGAG GAAGAGCAGA TGGATTTACC 
50
TCCTGGGTTC AGGTTTCATC CAACAGATGA AGAACTCATA ACTCACTATC 
100
TCCATAAGAA GGTTCTTGAC ACCAGCTTCT CAGCTAAAGC TATCGGTGAA 
150
GTTGATTTAA ACAAATCAGA GCCATGGGAG TTACCATGGA TGGCAAAAAT 
200
GGGTGAGAAA GAATGGTATT TTTTCTGTGT GAGAGACAGA AAGTATCCCA 
250
CCGGTTTAAG AACTAACCGA GCAACTGAAG CCGGTTATTG GAAGGCGACC 
300
GGGAAGGATA AAGAGATATA CCGAGGCAAA TCACTTGTTG GGATGAAGAA 
350
GACACTTGTT TTCTATAGAG GAAGAGCTCC TAAAGGTCAG AAAACCAACT 
400
GGGTGATGCA TGAGTACAGG CTTGAAGGAA AATTCTCTGC CCATAACTTG 
450
CCGAAAACCG CAAAGAATGA ATGGGTGATA TGCAGGGTGT TCCAAAAGAG 
500
TGCTGGAGGG AAGAAGATCC CGATTTCGAG TCTAATCCGA ATCGGTTCAC 
550
TCGGAACCGA CTTTAACCCT TCGCTTTTGC CCTCTTTAAC CGATTCTTCG 
600
CCTTACAACG ATAAAACCAA AACAGAACCG GTCTACGTGC CCTGCTTCTC 
650
CAACCAAACG GATCAAAACC AAGGAACCAC ACTCAATTGC TTCAGCAGCC 
700
CTGTTCTTAA CTCGATCCAA GCCGACATTT TTCACAGGAT TCCACTCTAT 
750
CAAACTCAGT CCCTCCAGGT TTCTATGAAT CTACAGAGCC CGGTTCTCAC 
800
GCAAGAACAC TCAGTTCTAC ATGCTATGAT CGAGAACAAC AGAAGACAAA 
850
GTCTCAAAAC GATGAGTGTC TCACAAGAAA CCGGAGTTTC AACTGACATG 
900
AACACTGATA TCTCATCGGA TTTTGAATTT GGTAAGAGAC GGTTTGATTC 
950
TCAAGAAGAT CCGTCTTCCT CTACTGGACC GGTTGATCTT GAACCTTTCT 
1000
GGAATTACTG A
1050

>AT5G61430.1 longest ORF length:336
METFCGFQKE EEQMDLPPGF RFHPTDEELI THYLHKKVLD TSFSAKAIGE 
50
VDLNKSEPWE LPWMAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT 
100
GKDKEIYRGK SLVGMKKTLV FYRGRAPKGQ KTNWVMHEYR LEGKFSAHNL 
150
PKTAKNEWVI CRVFQKSAGG KKIPISSLIR IGSLGTDFNP SLLPSLTDSS 
200
PYNDKTKTEP VYVPCFSNQT DQNQGTTLNC FSSPVLNSIQ ADIFHRIPLY 
250
QTQSLQVSMN LQSPVLTQEH SVLHAMIENN RRQSLKTMSV SQETGVSTDM 
300
NTDISSDFEF GKRRFDSQED PSSSTGPVDL EPFWNY
350