fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G61620 myb-like transcription factor family protein (.1)

>AT5G61620.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, KpnI, NdeI, NheI, NotI, PacI, PstI, PvuII, SacI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
EcoRI G|AATTC 596
HindIII A|AGCTT 845
HpaI GTT|AAC 475
NcoI C|CATGG 325
SalI G|TCGAC 414
StyI C|C[AT][AT]GG 325


Click here to view TAIR data

>AT5G61620.1 length:954
ATGGTGAAGG AGACGGTGAC GGTGGCGAAA ACGTGCTCAC ACTGTGGCCA 
50
TAATGGCCAT AACGCACGGA CTTGTCTCAA CGGCGTTAAT AAGGCAAGTG 
100
TTAAACTGTT CGGCGTTAAT ATATCGTCTG ATCCGATTAG GCCGCCTGAG 
150
GTAACGGCGT TAAGGAAGAG TCTTAGTTTG GGAAACCTTG ATGCTCTTCT 
200
CGCTAACGAT GAAAGTAACG GTAGCGGTGA TCCTATCGCC GCCGTTGATG 
250
ATACCGGTTA TCATTCCGAT GGTCAGATTC ATTCCAAGAA GGGTAAAACT 
300
GCTCATGAGA AGAAAAAGGG GAAGCCATGG ACGGAAGAAG AACATCGTAA 
350
TTTCTTAATC GGTTTAAACA AACTCGGAAA AGGAGATTGG AGAGGCATTG 
400
CAAAGAGTTT CGTGTCGACA AGAACACCAA CACAAGTCGC AAGTCATGCT 
450
CAGAAATATT TTATTAGGTT AAACGTTAAC GACAAGAGAA AAAGACGTGC 
500
TAGTCTCTTT GACATCTCTC TCGAAGATCA GAAGGAGAAA GAGAGGAACT 
550
CTCAAGATGC TTCAACAAAG ACTCCACCTA AACAACCAAT AACCGGAATT 
600
CAACAACCGG TAGTACAAGG TCATACTCAA ACCGAGATTT CGAACAGGTT 
650
TCAGAATTTA TCAATGGAGT ATATGCCAAT CTACCAACCC ATACCACCTT 
700
ACTACAACTT TCCACCTATT ATGTACCATC CAAATTATCC AATGTACTAT 
750
GCCAACCCTC AAGTACCGGT TAGGTTTGTT CATCCTTCTG GTATACCTGT 
800
TCCAAGACAT ATACCGATTG GTTTGCCTCT GTCTCAACCG AGTGAAGCTT 
850
CTAATATGAC AAATAAAGAC GGTTTGGATC TTCATATCGG TTTGCCTCCA 
900
CAAGCTACTG GAGCTTCTGA CTTGACTGGT CATGGCGTTA TTCATGTGAA 
950
ATGA
1000

>AT5G61620.1 longest ORF length:317
MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE 
50
VTALRKSLSL GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT 
100
AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA 
150
QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI 
200
QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY 
250
ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP 
300
QATGASDLTG HGVIHVK
350