fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G61890 Integrase-type DNA-binding superfamily protein (.1)

>AT5G61890.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, HpaI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
KpnI GGTAC|C 592
NcoI C|CATGG 289
PvuII CAG|CTG 305
StyI C|C[AT][AT]GG 243, 289


Click here to view TAIR data

>AT5G61890.1 length:747
ATGTATGGGA AGAGGCCTTT TGGAGGTGAT GAATCTGAAG AAAGGGAAGA 
50
AGATGAGAAC TTGTTCCCGG TCTTCTCGGC CCGATCTCAA CACGACATGC 
100
GTGTTATGGT CTCGGCCTTG ACTCAAGTAA TCGGAAACCA ACAAAGCAAA 
150
TCTCATGATA ACATCAGCTC TATTGATGAT AACTATCCTT CTGTGTATAA 
200
TCCACAAGAC CCTAATCAAC AAGTTGCGCC TACTCATCAA GACCAAGGGG 
250
ACTTGAGGAG GAGACATTAT AGAGGTGTAA GGCAAAGGCC ATGGGGAAAG 
300
TGGGCAGCTG AAATCCGAGA CCCAAAAAAG GCGGCACGTG TGTGGCTCGG 
350
GACATTTGAA ACCGCTGAAT CTGCGGCCTT AGCTTATGAT GAAGCAGCCC 
400
TAAAGTTCAA AGGAAGCAAA GCAAAACTCA ATTTCCCGGA GAGGGTTCAG 
450
CTTGGAAGTA ACTCTACATA TTACTCCTCC AACCAAATTC CACAAATGGA 
500
ACCACAAAGT ATACCGAACT ATAATCAATA CTATCATGAT GCGAGTAGTG 
550
GTGATATGCT AAGTTTTAAT TTGGGCGGTG GGTATGGGAG TGGTACCGGA 
600
TATTCAATGT CTCATGATAA TAGTACTACG ACTGCTGCTA CAACTTCTTC 
650
GTCTTCTGGT GGCTCTTCTA GGCAACAAGA AGAGCAAGAT TATGCCAGAT 
700
TCTGGCGCTT TGGGGATTCT TCTTCCTCTC CTCATTCGGG ATATTAA
750

>AT5G61890.1 longest ORF length:248
MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK 
50
SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK 
100
WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ 
150
LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG 
200
YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY
250