|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G62260 | AT hook motif DNA-binding family protein (.1) |
>AT5G62260.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRV, HpaI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI
| Name | Recognition sequence | Cut positions |
| EcoRI | G|AATTC | 957 |
| HindIII | A|AGCTT | 56, 1004 |
| KpnI | GGTAC|C | 168 |
| NdeI | CA|TATG | 638 |
| PvuII | CAG|CTG | 791 |
| StyI | C|C[AT][AT]GG | 277 |
| XhoI | C|TCGAG | 554 |
Click here to view TAIR data
>AT5G62260.1 length:1215
ATGGAGGAGA AAGGTGAAAT AAGTCCAAGT GGGGTCGTCA CAGTTAAGGG | 50 |
AGATGAAGCT TTGGTTCCAA GAACAGAGTT TCAACAAAAC CCTAGTTTTC | 100 |
TCCAATTCGT GAGTCCCACA ACGGTAGTGA CTCCTCTCCC TCCTCCACCA | 150 |
GCTCCGTCTT CGGCTCCGGT ACCAACCACC GTGACTCCTG GCTCAGCCAC | 200 |
AGCATCAACC GGATCAGATC CGACGAAAAA GAAGAGAGGA AGACCGAGGA | 250 |
AGTACGCACC AGACGGAAGC CTGAACCCTA GGTTTTTGCG ACCAACTCTG | 300 |
TCTCCAACTC CAATCTCATC TTCGATTCCA TTGTCTGGAG ATTATCAATG | 350 |
GAAACGAGGC AAAGCTCAGC AGCAGCATCA GCCTCTTGAG TTCGTCAAGA | 400 |
AATCTCACAA ATTCGAGTAT GGAAGCCCAG CTCCTACTCC TCCTCTTCCT | 450 |
GGGCTCTCAT GCTATGTGGG TGCAAATTTT ACGACCCATC AATTTACTGT | 500 |
CAATGGCGGT GAGGATGTGA CAATGAAGGT TATGCCGTAT TCGCAACAAG | 550 |
GATCTCGAGC TATCTGCATT CTTTCTGCAA CTGGTTCGAT CTCTAATGTC | 600 |
ACTCTTGGTC AACCTACCAA TGCAGGTGGC ACTCTTACAT ATGAGGGTCG | 650 |
GTTTGAGATA CTATCGCTAT CTGGTTCCTT TATGCCTACT GAAAATGGAG | 700 |
GAACAAAAGG TCGGGCTGGT GGGATGAGCA TTTCTTTAGC CGGACCAAAT | 750 |
GGCAATATAT TTGGTGGTGG CCTTGCCGGT ATGCTTATAG CAGCTGGTCC | 800 |
TGTTCAGGTG GTAATGGGAA GTTTCATTGT GATGCATCAA GCAGAACAAA | 850 |
ATCAGAAGAA GAAACCTAGA GTTATGGAGG CTTTTGCTCC ACCACAACCA | 900 |
CAAGCACCAC CACAACTGCA ACAACAACAA CCTCCTACTT TTACCATAAC | 950 |
AACCGTGAAT TCAACTTCTC CTTCGGTGAA CACCGTAGAG GAGCAGAAAC | 1000 |
CACAAGCTTA TGGTGGTGGT ATAGTGAGAC CGATGGCTCA AATGCCTTCT | 1050 |
TCTTTCCAAA ACGACAATTC AACTATGAAC AATTTCACAC CGGCCTATCA | 1100 |
TGGATACGGG AATATGAACA CTGGTACTAC TCACAAAGAA GAACATGAAG | 1150 |
ACGAAGATGG TGGTGATGAT GATGATGATT CAGGCGATAC TAGGAGCCAA | 1200 |
TCTCATAGTG GTTGA | 1250 |
>AT5G62260.1 longest ORF length:404
MEEKGEISPS GVVTVKGDEA LVPRTEFQQN PSFLQFVSPT TVVTPLPPPP | 50 |
APSSAPVPTT VTPGSATAST GSDPTKKKRG RPRKYAPDGS LNPRFLRPTL | 100 |
SPTPISSSIP LSGDYQWKRG KAQQQHQPLE FVKKSHKFEY GSPAPTPPLP | 150 |
GLSCYVGANF TTHQFTVNGG EDVTMKVMPY SQQGSRAICI LSATGSISNV | 200 |
TLGQPTNAGG TLTYEGRFEI LSLSGSFMPT ENGGTKGRAG GMSISLAGPN | 250 |
GNIFGGGLAG MLIAAGPVQV VMGSFIVMHQ AEQNQKKKPR VMEAFAPPQP | 300 |
QAPPQLQQQQ PPTFTITTVN STSPSVNTVE EQKPQAYGGG IVRPMAQMPS | 350 |
SFQNDNSTMN NFTPAYHGYG NMNTGTTHKE EHEDEDGGDD DDDSGDTRSQ | 400 |
SHSG | 450 |