fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G62380 ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)

>AT5G62380.1 CDS map

>>Show genomic map




Uncut enzymes: AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, KpnI, NheI, NotI, PacI, PstI, PvuII, SacI, SalI, XhoI
Name Recognition sequence Cut positions
ApaI GGGCC|C 356
HpaI GTT|AAC 901
NcoI C|CATGG 145
NdeI CA|TATG 754
SmaI CCC|GGG 93
SpeI A|CTAGT 804
StyI C|C[AT][AT]GG 145
XbaI T|CTAGA 591


Click here to view TAIR data

>AT5G62380.1 length:1047
ATGGAAAGTC TCGCACACAT TCCTCCCGGT TATCGATTCC ATCCGACCGA 
50
TGAAGAACTC GTTGACTATT ATCTCAAGAA CAAAGTTGCA TTCCCGGGAA 
100
TGCAAGTTGA TGTTATCAAA GATGTTGATC TCTACAAAAT CGAGCCATGG 
150
GACATCCAAG AGTTATGTGG AAGAGGGACA GGAGAAGAGA GGGAATGGTA 
200
TTTCTTTAGC CACAAGGACA AGAAATATCC AACTGGGACA CGAACCAATA 
250
GAGCAACGGG CTCCGGATTT TGGAAAGCAA CGGGTCGAGA CAAGGCCATT 
300
TACTCAAAGC AAGAGCTTGT TGGGATGAGG AAGACTCTTG TCTTTTACAA 
350
AGGTAGGGCC CCAAATGGTC AGAAATCTGA TTGGATAATG CACGAATACC 
400
GTCTTGAGAC CGATGAAAAT GGACCGCCTC ATGAGGAAGG ATGGGTGGTT 
450
TGTCGCGCTT TCAAGAAGAA GCTAACCACG ATGAACTACA ACAATCCAAG 
500
AACAATGATG GGATCATCAT CAGGCCAAGA ATCTAACTGG TTCACGCAGC 
550
AAATGGATGT GGGGAATGGT AATTACTATC ATCTTCCTGA TCTAGAGAGT 
600
CCGAGAATGT TTCAAGGCTC ATCATCATCA TCACTATCAT CATTACATCA 
650
GAATGATCAA GACCCTTATG GTGTCGTACT CAGCACTATT AACGCAACCC 
700
CAACTACAAT AATGCAACGA GATGATGGTC ATGTGATTAC CAATGATGAT 
750
GATCATATGA TCATGATGAA CACAAGTACT GGTGATCATC ATCAATCAGG 
800
ATTACTAGTC AATGATGATC ATAATGATCA AGTAATGGAT TGGCAAACGC 
850
TTGACAAGTT TGTTGCTTCT CAGCTAATCA TGAGCCAAGA AGAGGAAGAA 
900
GTTAACAAAG ATCCATCAGA TAATTCTTCG AATGAAACAT TTCATCATCT 
950
CTCTGAAGAG CAAGCTGCAA CAATGGTTTC GATGAATGCT TCTTCCTCTT 
1000
CTTCTCCATG TTCCTTCTAC TCTTGGGCTC AAAATACACA CACGTAA
1050

>AT5G62380.1 longest ORF length:348
MESLAHIPPG YRFHPTDEEL VDYYLKNKVA FPGMQVDVIK DVDLYKIEPW 
50
DIQELCGRGT GEEREWYFFS HKDKKYPTGT RTNRATGSGF WKATGRDKAI 
100
YSKQELVGMR KTLVFYKGRA PNGQKSDWIM HEYRLETDEN GPPHEEGWVV 
150
CRAFKKKLTT MNYNNPRTMM GSSSGQESNW FTQQMDVGNG NYYHLPDLES 
200
PRMFQGSSSS SLSSLHQNDQ DPYGVVLSTI NATPTTIMQR DDGHVITNDD 
250
DHMIMMNTST GDHHQSGLLV NDDHNDQVMD WQTLDKFVAS QLIMSQEEEE 
300
VNKDPSDNSS NETFHHLSEE QAATMVSMNA SSSSSPCSFY SWAQNTHT
350