Locus |
Common name |
Short description |
AT5G62610 |
bHLH079 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) |
>AT5G62610.1 CDS map
>>Show genomic map
Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HindIII, KpnI, NcoI, NheI, NotI, PacI, PvuII, SacI, SalI, SmaI, StyI, XbaI, XhoI
Name |
Recognition sequence |
Cut positions |
HpaI
| GTT|AAC |
121, 667 |
NdeI
| CA|TATG |
808 |
PstI
| CTGCA|G |
35 |
SpeI
| A|CTAGT |
12 |
Click here to view TAIR data
>AT5G62610.1 length:846
ATGGACCCTC CACTAGTGAA CGATTCCTCC TTCTCTGCAG CTAATCCTTC | 50 |
TTCTTACACT CTCTCCGAGA TTTGGCCTTT CCCTGTAAAC GACGCCGTTC | 100 |
GCTCTGGTCT CCGTTTAGCT GTTAACTCCG GTCGAGTCTT TACTCGCTCT | 150 |
GAACATTCCG GCAATAAAGA CGTCTCCGCG GCTGAGGAAT CTACAGTCAC | 200 |
CGATCTAACT GCTGGCTGGG GAAGTAGAAA GACTAGAGAT TTGAACTCTG | 250 |
AGGATGATTC TTCAAAGATG GTTTCTTCCA GCAGCAGTGG TAATGAATTG | 300 |
AAAGAATCAG GGGATAAGAA AAGAAAACTG TGTGGATCTG AAAGTGGAAA | 350 |
TGGAGATGGT TCGATGAGAC CTGAAGGCGA AACAAGTTCG GGTGGTGGTG | 400 |
GAAGCAAAGC AACGGAACAG AAGAACAAAC CTGAGCCACC AAAGGATTAT | 450 |
ATTCATGTGA GAGCAAGAAG AGGACAAGCT ACTGACCGGC ATAGTTTAGC | 500 |
AGAGCGAGCT AGAAGAGAAA AGATCAGTGA GAAGATGACA GCTCTTCAAG | 550 |
ATATAATTCC AGGATGTAAT AAGATAATCG GAAAAGCCCT TGTGCTCGAT | 600 |
GAGATTATCA ATTATATTCA GTCATTGCAG CGGCAAGTTG AGTTTCTATC | 650 |
AATGAAGCTA GAAGTTGTTA ACTCGGGTGC AAGTACTGGT CCGACAATAG | 700 |
GAGTTTTTCC TTCCGGTGAT CTCGGGACTT TACCGATTGA CGTTCATCGA | 750 |
ACAATATACG AGCAACAAGA AGCTAATGAA ACCCGAGTAT CTCAACCGGA | 800 |
GTGGCTCCAT ATGCAGGTTG ATGGGAACTT TAACCGAACC ACATAA | 850 |
>AT5G62610.1 longest ORF length:281
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS | 50 |
EHSGNKDVSA AEESTVTDLT AGWGSRKTRD LNSEDDSSKM VSSSSSGNEL | 100 |
KESGDKKRKL CGSESGNGDG SMRPEGETSS GGGGSKATEQ KNKPEPPKDY | 150 |
IHVRARRGQA TDRHSLAERA RREKISEKMT ALQDIIPGCN KIIGKALVLD | 200 |
EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD LGTLPIDVHR | 250 |
TIYEQQEANE TRVSQPEWLH MQVDGNFNRT T | 300 |
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