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| Locus | Common name | Short description |
| AT5G62940 | AtDof5.6, HCA2 | HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) |
>AT5G62940.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccI, AccII(FnuDII), AfeI, AflII, AflIII, AgeI, AhdI, AlwI, AlwNI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BbsI, BbvCI, BbvI, BcgI, BciVI, BglI, BglII, BlpI, BmrI, BpmI, BsaAI, BsaHI, BsaI, BsaXI, BseRI, BsgI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, BsoBI, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrFI, BsrGI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstUI, BstXI, BstYI, BstZ17I, Bsu36I, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, EarI, EciI, EcoNI, EcoO109I, EcoRV, FauI, FokI, FseI, FspI, HaeII, HgaI, HindIII, HpaI, HphI, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NheI, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PaeR7I, PciI, PflFI, PflMI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PvuI, PvuII, RsaI, RsrII, SacI, SacII, SalI, SapI, Sau96I, SbfI, ScaI, SfaNI, SfiI, SfoI, SgrAI, SmaI, SmlI, SnaBI, SpeI, SphI, StuI, SwaI, TliI, Tsp45I, TspRI, Tth111I, XbaI, XcmI, XhoI, XmaI, XmnI
| Name | Recognition sequence | Cut positions |
| AccIII(BspMII) | T|CCGGA | 549 |
| AciI | C|CGC | 159, 441 |
| AclI | AA|CGTT | 562 |
| AluI | AG|CT | 118, 166 |
| ApoI | Pu|AATTPy | 90 |
| BanII | GPuGCPy|C | 606 |
| BclI | T|GATCA | 864 |
| BfaI | C|TAG | 113, 129, 503, 609 |
| BsaBI | GATNN|NNATC | 704 |
| BsaJI | C|CNNGG | 143, 149, 1109 |
| BsaWI | [AT]|CCGG[AT] | 348, 549 |
| BsiEI | CGPuPy|CG | 146 |
| BslI | CCNNNNN|NNGG | 354, 555, 674 |
| Bsp1286I | G[GAT]GC[CAT]|C | 606 |
| BspEI | T|CCGGA | 549 |
| BsrDI | GCAATGNN| | 802, 1030 |
| BsrI | ACTGGN| | 317 |
| BssKI | |CCNGG | 44, 668 |
| BstF5I | GGATGNN| | 362, 528, 919 |
| BstNI | CC|[AT]GG | 44, 668 |
| BtgI | C|CPuPyGG | 149 |
| Cac8I | GCN|NGC | 121 |
| DdeI | C|TNAG | 247, 280, 336 |
| DpnI | GA-CH3|TC | 455, 641, 698, 863, 890, 962 |
| DpnII | |GATC | 455, 641, 698, 863, 890, 962 |
| DrdI | GACNNNN|NNGTC | 670 |
| EaeI | Py|GGCCPu | 146 |
| EagI | C|GGCCG | 146 |
| EcoRI | G|AATTC | 90 |
| Fnu4HI | GC|NGC | 102, 117, 124, 159, 165, 191, 956 |
| HaeIII | GG|CC | 145 |
| HhaI | GCG|C | 996 |
| HinP1I | G|CGC | 996 |
| HincII | GTPy|PuAC | 237 |
| HinfI | G|ANTC | 30, 48, 54, 78, 234, 734 |
| HpaII | C|CGG | 347, 414, 548 |
| Hpy188I | TCN|GA | 33, 51, 170, 453, 731, 932, 1008 |
| Hpy99I | CG[AT]CG| | 1010, 1057 |
| HpyCH4III | ACN|GT | 178, 631, 739, 1012, 1045 |
| HpyCH4IV | A|CGT | 561, 1088 |
| HpyCH4V | TG|CA | 23, 122, 163, 296 |
| MboI | |GATC | 455, 641, 698, 863, 890, 962 |
| MseI | T|TAA | 678, 750, 777 |
| MslI | CAPyNN|NNPuTG | 521, 652 |
| MspA1I | C[AC]G|C[GT]G | 161 |
| MspI | C|CGG | 347, 414, 548 |
| MwoI | GCNNNNN|NNGC | 159, 586, 953 |
| N.BstNBI | GAGTCNNNN|N | 59, 239 |
| NlaIII | CATG| | 25, 70, 554, 646, 673, 683, 724, 820, 834 |
| NlaIV | GGN|NCC | 41 |
| NspI | PuCATG|Py | 71, 835 |
| PspGI | |CC[AT]GG | 44, 668 |
| PstI | CTGCA|G | 164 |
| Sau3AI | |GATC | 455, 641, 698, 863, 890, 962 |
| ScrFI | CC|NGG | 44, 668 |
| SexAI | A|CC[AT]GGT | 669 |
| SfcI | C|TPuPyAG | 155, 164, 270 |
| SspI | AAT|ATT | 343 |
| StyI | C|C[AT][AT]GG | 1109 |
| Taqƒ¿I | T|CGA | 830 |
| TfiI | G|A[AT]TC | 30, 48, 734 |
| TseI | G|C[AT]GC | 102, 117, 124, 162, 191, 956 |
| Tsp509I | |AATT | 89, 392, 485, 857 |
Click here to view TAIR data
>AT5G62940.1 length:1119
ATGGGTCTCA CTTCTCTTCA AGTTTGCATG GATTCTGATT GGCTCCAGGA | 50 |
ATCCGAGTCA TCAGGAGGAA GCATGTTAGA CTCTTCAACG AATTCTCCGT | 100 |
CAGCAGCCGA CATACTAGCA GCTTGCAGCA CTAGACCACA AGCCTCGGCC | 150 |
GTGGCTGTAG CCGCTGCAGC TCTGATGGAC GGTGGAAGGA GGCTGCGTCC | 200 |
ACCTCACGAC CATCCTCAAA AGTGTCCTCG TTGCGAGTCA ACACATACTA | 250 |
AGTTCTGTTA CTACAATAAC TACAGCCTCT CTCAGCCTCG TTACTTCTGC | 300 |
AAGACTTGTC GCCGTTACTG GACAAAAGGC GGAACTCTAA GGAATATTCC | 350 |
GGTTGGTGGT GGATGCCGTA AAAACAAGAA ACCATCTTCC TCTAATTCCT | 400 |
CCTCCTCCAC TTCTTCCGGC AAAAAACCAT CCAACATCGT TACCGCCAAT | 450 |
ACCTCTGATC TTATGGCTTT AGCACATTCT CATCAAAATT ACCAACATTC | 500 |
TCCTCTAGGG TTTTCACATT TTGGTGGGAT GATGGGGTCT TACTCAACTC | 550 |
CGGAGCATGG TAACGTTGGT TTCTTGGAGA GCAAGTATGG CGGTTTGCTT | 600 |
TCGCAGAGCC CTAGACCTAT TGATTTCTTG GACAGTAAGT TTGATCTCAT | 650 |
GGGAGTGAAC AATGACAACC TGGTCATGGT TAATCATGGA AGTAACGGAG | 700 |
ATCATCATCA TCATCATAAT CATCACATGG GTCTGAATCA CGGTGTAGGT | 750 |
CTTAACAACA ACAACAACAA TGGTGGATTT AATGGGATTT CTACGGGAGG | 800 |
CAATGGAAAT GGTGGTGGTC TCATGGATAT ATCGACATGC CAAAGACTTA | 850 |
TGCTATCTAA TTATGATCAT CACCATTACA ATCATCAAGA AGATCATCAA | 900 |
AGGGTAGCAA CAATAATGGA TGTGAAGCCA AATCCGAAGT TGTTATCGCT | 950 |
TGATTGGCAG CAAGATCAAT GCTACTCCAA TGGTGGTGGT AGCGGAGGCG | 1000 |
CAGGAAAATC CGACGGTGGT GGATACGGCA ATGGTGGTTA TATCAACGGT | 1050 |
TTAGGTTCGT CGTGGAATGG TTTGATGAAT GGCTATGGAA CGTCCACTAA | 1100 |
AACAAACTCC TTGGTTTGA | 1150 |
>AT5G62940.1 longest ORF length:372
MGLTSLQVCM DSDWLQESES SGGSMLDSST NSPSAADILA ACSTRPQASA | 50 |
VAVAAAALMD GGRRLRPPHD HPQKCPRCES THTKFCYYNN YSLSQPRYFC | 100 |
KTCRRYWTKG GTLRNIPVGG GCRKNKKPSS SNSSSSTSSG KKPSNIVTAN | 150 |
TSDLMALAHS HQNYQHSPLG FSHFGGMMGS YSTPEHGNVG FLESKYGGLL | 200 |
SQSPRPIDFL DSKFDLMGVN NDNLVMVNHG SNGDHHHHHN HHMGLNHGVG | 250 |
LNNNNNNGGF NGISTGGNGN GGGLMDISTC QRLMLSNYDH HHYNHQEDHQ | 300 |
RVATIMDVKP NPKLLSLDWQ QDQCYSNGGG SGGAGKSDGG GYGNGGYING | 350 |
LGSSWNGLMN GYGTSTKTNS LV | 400 |