fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G63260 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)

>AT5G63260.1 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, BglII, EcoRV, HpaI, KpnI, NcoI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 715
EcoRI G|AATTC 988
HindIII A|AGCTT 845
NdeI CA|TATG 775
PvuII CAG|CTG 1296
SpeI A|CTAGT 946
StyI C|C[AT][AT]GG 564


Click here to view TAIR data

>AT5G63260.1 length:1308
ATGAGCAAGC CCGAAGAAAC TTCCGACCCG AACCCAACCG GACCCGATCC 
50
GTCTCGATCT TCCTCCGATG AGGTCACCGT CACCGTCGCC GATCGGGCTC 
100
CGTCTGATCT CAATCACGTT TCTGAGGAGC TAAGTGATCA ATTGAGGAAT 
150
GTGGGTTTGG ATGATTCTGC GAAAGAGCTG AGTGTTCCGA TTAGTGTCCC 
200
TCAAGGTAAT GTAGAAACGG ATTCGAGGGC ATTATTCGGC AGCGATCAAA 
250
AGGAGGAAGA AGAAGGGAGC GAGAAGAGAA TGATGATGGT GTATCCAGTG 
300
AGACCTGATT CAGAGGATTG TTCGTTTTAT ATGAGAACTG GAAGCTGCAA 
350
ATACGGATCA AGTTGCAAGT TCAATCACCC TGTTCGCAGG AAACTTCAAA 
400
TTGGTAGGGA GAGAGTAAGG GAAAGAGACG AGGATGTGGA GAACCCAAAG 
450
CTGATGGAGT GTAAGTACTA CTTTAGGACT GGAGGGTGCA AATATGGAGA 
500
GTCTTGTAGA TTCAGCCACA TGAAAGAACA TAATTCTCCG GCCTCAGTAC 
550
CAGAGCTTAA CTTCCTTGGC CTTCCTATCA GACCGGGAGA GAAAGAATGC 
600
CCGTTCTACA TGCGCAATGG CTCCTGCAAG TTTGGATCAG ACTGCAAATT 
650
TAATCATCCT GATCCTACAG CTATCGGAGG AGTTGATTCT CCCTTGTACC 
700
GTGGTAATAA CGGTGGATCC TTTTCCCCAA AGGCCCCATC CCAAGCAAGT 
750
TCAACTTCTT GGTCTTCAAC GAGACATATG AATGGTACTG GTACTGCTCC 
800
TTTTATTCCA TCCATGTTCC CCCATAGTCG TGGAGTTACA CCTCAAGCTT 
850
CAGACTGGAA TGGGTATCAG GCGTCTTCTG CCTATCCACC AGAAAGGAGT 
900
CCACTTGCTC CTTCCTCATA CCAGGTGAAC AATTCATTGG CTGAAACTAG 
950
TTCATTCTCA CAATACCAAC ACCAGATGTC TGTTGAGGAA TTCCCAGAAC 
1000
GCCCGGATCA ACCAGAGTGC ACTTATTATC TTAAAACTGG GGACTGTAAG 
1050
TTCAAATATA AATGCAAATA CCATCATCCG AAAAATAGAT TGCCGAAGCA 
1100
AGCTGCATTC TCTTTCAATG ACAAGGGCTT GCCCCTAAGA CCTGATCAGA 
1150
GCATGTGCAC ACACTACAGC CGATATGGCA TCTGCAAATT TGGTCCAGCT 
1200
TGTAGATTTG ATCATTCCAT ACCGCCCACA TTCTCGCCCA GCAGCTCCCA 
1250
AACCGTAGAA GCTCGTCAAG TTGGCGCTAA CGGAAATGAA GATGACAGCT 
1300
GGCATTGA
1350

>AT5G63260.1 longest ORF length:435
MSKPEETSDP NPTGPDPSRS SSDEVTVTVA DRAPSDLNHV SEELSDQLRN 
50
VGLDDSAKEL SVPISVPQGN VETDSRALFG SDQKEEEEGS EKRMMMVYPV 
100
RPDSEDCSFY MRTGSCKYGS SCKFNHPVRR KLQIGRERVR ERDEDVENPK 
150
LMECKYYFRT GGCKYGESCR FSHMKEHNSP ASVPELNFLG LPIRPGEKEC 
200
PFYMRNGSCK FGSDCKFNHP DPTAIGGVDS PLYRGNNGGS FSPKAPSQAS 
250
STSWSSTRHM NGTGTAPFIP SMFPHSRGVT PQASDWNGYQ ASSAYPPERS 
300
PLAPSSYQVN NSLAETSSFS QYQHQMSVEE FPERPDQPEC TYYLKTGDCK 
350
FKYKCKYHHP KNRLPKQAAF SFNDKGLPLR PDQSMCTHYS RYGICKFGPA 
400
CRFDHSIPPT FSPSSSQTVE ARQVGANGNE DDSWH
450