fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G63470 NF-YC4 "nuclear factor Y, subunit C4", nuclear factor Y, subunit C4 (.1.2)

>AT5G63470.2 CDS map

>>Show genomic map




Uncut enzymes: ApaI, AscI, HpaI, KpnI, NdeI, NheI, NotI, PacI, PstI, SacI, SalI, SmaI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
BamHI G|GATCC 615
BglII A|GATCT 355
EcoRI G|AATTC 672
EcoRV GAT|ATC 406, 433
HindIII A|AGCTT 320
NcoI C|CATGG 726
PvuII CAG|CTG 677
StyI C|C[AT][AT]GG 463, 726, 744


Click here to view TAIR data

>AT5G63470.2 length:753
ATGGACAATA ACAACAACAA CAACAACCAG CAACCACCAC CAACCTCCGT 
50
CTATCCACCT GGCTCCGCCG TCACAACCGT AATCCCTCCT CCACCATCTG 
100
GATCTGCATC AATAGTCACC GGAGGAGGAG CGACATACCA CCACCTCCTC 
150
CAGCAACAAC AGCAACAGCT TCAAATGTTC TGGACATACC AGAGACAAGA 
200
GATCGAACAG GTAAACGATT TCAAAAACCA TCAGCTCCCT CTAGCTCGTA 
250
TCAAAAAAAT CATGAAAGCT GATGAAGATG TGCGTATGAT CTCCGCCGAA 
300
GCACCGATTC TCTTCGCGAA AGCTTGTGAG CTTTTCATTC TCGAACTTAC 
350
GATTAGATCT TGGCTTCACG CTGAAGAGAA CAAACGTCGT ACGCTTCAGA 
400
AAAACGATAT CGCTGCTGCG ATTACTAGAA CCGATATCTT CGATTTCCTT 
450
GTTGATATTG TTCCTAGGGA AGAGATCAAG GAAGAGGAAG ATGCAGCATC 
500
GGCTCTTGGT GGAGGAGGTA TGGTTGCTCC CGCCGCGAGC GGTGTTCCTT 
550
ATTATTATCC ACCGATGGGA CAACCGGCGG TTCCTGGAGG GATGATGATT 
600
GGAAGACCGG CGATGGATCC TAGCGGTGTT TATGCTCAGC CTCCTTCTCA 
650
GGCATGGCAA AGCGTTTGGC AGAATTCAGC TGGTGGTGGT GATGATGTGT 
700
CTTATGGAAG TGGAGGAAGT AGCGGCCATG GTAATCTCGA TAGCCAAGGG 
750
TAA
800

>AT5G63470.2 longest ORF length:250
MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL 
50
QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE 
100
APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL 
150
VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI 
200
GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG 
250