fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system

Locus Common name Short description
AT5G64530 ANAC104, XND1 Arabidopsis NAC domain containing protein 104, xylem NAC domain 1 (.1)

>AT5G64530.1 CDS map

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Uncut enzymes: ApaI, AscI, BamHI, BglII, EcoRI, EcoRV, HpaI, KpnI, NcoI, NdeI, NheI, NotI, PacI, PstI, PvuII, SalI, SpeI, XbaI, XhoI
Name Recognition sequence Cut positions
HindIII A|AGCTT 71, 152, 552
SacI GAGCT|C 43
SmaI CCC|GGG 145
StyI C|C[AT][AT]GG 133


Click here to view TAIR data

>AT5G64530.1 length:564
ATGAATCTAC CACCGGGATT TAGGTTTTTT CCGACCGATG AAGAGCTCGT 
50
CGTTCACTTC CTCCACCGGA AAGCTTCCCT CTTGCCTTGT CACCCTGATG 
100
TCATCCCCGA CCTTGATCTT TACCATTACG ATCCTTGGGA CCTTCCCGGG 
150
AAAGCTTTGG GAGAAGGGAG GCAATGGTAC TTCTATAGTA GAAAGACACA 
200
AGAGAGAGTG ACAAGCAATG GGTATTGGGG ATCAATGGGA ATGGACGAGC 
250
CAATCTACAC AAGCTCCACA CACAAGAAAG TGGGAATCAA AAAGTATCTA 
300
ACTTTCTATC TCGGAGATTC TCAGACTAAT TGGATCATGC AAGAATATTC 
350
CCTCCCGGAT TCCTCTTCTT CATCTAGTCG ATCTTCTAAG AGATCAAGCC 
400
GTGCTTCTAG TTCTAGTCAC AAACCCGATT ATAGCAAGTG GGTGATATGC 
450
AGAGTGTATG AGCAAAATTG CAGTGAGGAG GAAGACGATG ATGGGACAGA 
500
ACTCTCATGT TTGGATGAAG TGTTTTTGTC TTTAGATGAT CTTGACGAAG 
550
TAAGCTTACC GTAA
600

>AT5G64530.1 longest ORF length:187
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YHYDPWDLPG 
50
KALGEGRQWY FYSRKTQERV TSNGYWGSMG MDEPIYTSST HKKVGIKKYL 
100
TFYLGDSQTN WIMQEYSLPD SSSSSSRSSK RSSRASSSSH KPDYSKWVIC 
150
RVYEQNCSEE EDDDGTELSC LDEVFLSLDD LDEVSLP
200