|
|
|
|
|
|
|
|
| Locus | Common name | Short description |
| AT5G65060 | FCL3, MAF3, AGL70 | MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) |
>AT5G65060.1 CDS map
>>Show genomic map
Uncut enzymes: AatII, Acc65I, AccII(FnuDII), AciI, AclI, AfeI, AflII, AgeI, AlwI, Aor51HI(Eco47III), ApaI, ApaLI, AscI, AseI, AvaII, AvrII, BaeI, BalI, BamHI, BanI, BanII, BbsI, BbvCI, BbvI, BcgI, BciVI, BclI, BglI, BlpI, BmrI, BpmI, BsaAI, BsaBI, BsaHI, BsaI, BsaJI, BsaXI, BseRI, BsgI, BsiEI, BsiHKAI, BsiWI, BsmAI, BsmBI, BsmFI, BsmI, Bsp1286I, BspDI, BspHI, BspMI, BspT107I(HgiCI), BsrBI, BsrDI, BsrFI, BsrGI, BsrI, BssHII, BssSI, BstAPI, BstBI, BstEII, BstF5I, BstUI, BstXI, BstZ17I, Bsu36I, BtgI, BtrI, BtsI, Cfr10I, ClaI, DraI, DraIII, EaeI, EagI, EarI, EciI, EcoNI, EcoO109I, EcoRI, EcoRV, FauI, FokI, FseI, FspI, HaeII, HaeIII, HgaI, HhaI, HinP1I, HpaI, HphI, HpyCH4III, I-CeuI, I-SceI, KasI, KpnI, MboII, MfeI, MluI, MlyI, MnlI, MscI, MspA1I, N.BstNBI, NaeI, , NarI, NciI, NcoI, NdeI, NgoMIV, NotI, NruI, NsiI, PI-PspI, PI-SceI(VDE), PacI, PflFI, PleI, PmeI, PmlI, PpuMI, PshAI, PsiI, PspOMI, PstI, PvuI, PvuII, RsrII, SacI, SacII, SapI, Sau96I, SbfI, ScaI, SexAI, SfaNI, SfcI, SfiI, SfoI, SgrAI, SmaI, SnaBI, SpeI, SphI, SspI, StuI, StyI, SwaI, TspRI, Tth111I, XbaI, XcmI, XmaI
| Name | Recognition sequence | Cut positions |
| AccI | GT|[AC][TG]AC | 47 |
| AccIII(BspMII) | T|CCGGA | 151 |
| AflIII | A|CPuPyGT | 185 |
| AhdI | GACNNN|NNGTC | 186 |
| AluI | AG|CT | 91, 306, 366, 394 |
| AlwNI | CAGNNN|CTG | 475 |
| ApoI | Pu|AATTPy | 257 |
| AvaI | C|PyCGPuG | 370 |
| BfaI | C|TAG | 287, 480 |
| BglII | A|GATCT | 243 |
| BsaWI | [AT]|CCGG[AT] | 145, 151, 175, 564 |
| BslI | CCNNNNN|NNGG | 476 |
| BsoBI | C|PyCGPuG | 370 |
| BspEI | T|CCGGA | 151 |
| BssKI | |CCNGG | 485 |
| BstNI | CC|[AT]GG | 485 |
| BstYI | Pu|GATCPy | 243 |
| Cac8I | GCN|NGC | 305, 481 |
| DdeI | C|TNAG | 239, 397 |
| DpnI | GA-CH3|TC | 19, 193, 200, 242 |
| DpnII | |GATC | 19, 193, 200, 242 |
| DrdI | GACNNNN|NNGTC | 77, 381 |
| Fnu4HI | GC|NGC | 578 |
| HincII | GTPy|PuAC | 47 |
| HindIII | A|AGCTT | 307 |
| HinfI | G|ANTC | 28, 117, 165, 315, 342, 473, 569 |
| HpaII | C|CGG | 144, 150, 174, 549, 563 |
| Hpy188I | TCN|GA | 260 |
| Hpy99I | CG[AT]CG| | 69 |
| HpyCH4IV | A|CGT | 500 |
| HpyCH4V | TG|CA | 247 |
| MboI | |GATC | 19, 193, 200, 242 |
| MseI | T|TAA | 231 |
| MslI | CAPyNN|NNPuTG | 224 |
| MspI | C|CGG | 144, 150, 174, 549, 563 |
| MwoI | GCNNNNN|NNGC | 135 |
| NheI | G|CTAGC | 481 |
| NlaIII | CATG| | 184, 218 |
| NlaIV | GGN|NCC | 148, 547 |
| NspI | PuCATG|Py | 185 |
| PaeR7I | C|TCGAG | 370 |
| PciI | A|CATGT | 185 |
| PflMI | CCANNNN|NTGG | 476 |
| PspGI | |CC[AT]GG | 485 |
| RsaI | GT|AC | 560 |
| SalI | G|TCGAC | 47 |
| Sau3AI | |GATC | 19, 193, 200, 242 |
| ScrFI | CC|NGG | 485 |
| SmlI | C|TPyPuAG | 370, 583 |
| Taqƒ¿I | T|CGA | 15, 30, 46, 84, 94, 324, 369 |
| TfiI | G|A[AT]TC | 28, 117, 315, 342, 473 |
| TliI | C|TCGAG | 370 |
| TseI | G|C[AT]GC | 578 |
| Tsp45I | |GT[CG]AC | 54, 178, 431, 520, 533 |
| Tsp509I | |AATT | 106, 256, 263, 388 |
| XhoI | C|TCGAG | 370 |
| XmnI | GAANN|NNTTC | 257 |
Click here to view TAIR data
>AT5G65060.1 length:591
ATGGGAAGAA GAAAAGTCGA GATCAAGCGA ATCGAGAACA AAAGCAGTCG | 50 |
ACAAGTCACT TTCTCCAAAC GACGCAAAGG TCTCATCGAA AAAGCTCGAC | 100 |
AACTTTCAAT TCTCTGTGAA TCTTCCATCG CTGTTGTCGC CGTCTCCGGT | 150 |
TCCGGAAAAC TCTACGACTC TGCCTCCGGT GACAACATGT CAAAGATCAT | 200 |
TGATCGTTAT GAAATACATC ATGCTGATGA ACTTAAAGCC TTAGATCTTG | 250 |
CAGAAAAAAT TCGGAATTAT CTTCCACACA AGGAGTTACT AGAAATAGTC | 300 |
CAAAGCAAGC TTGAAGAATC AAATGTCGAT AATGTAAGTG TAGATTCTCT | 350 |
AATATCTATG GAGGAACAGC TCGAGACTGC TCTGTCAGTA ATTAGAGCTA | 400 |
AGAAGACAGA ACTAATGATG GAGGATATGA AGTCACTTCA AGAAAGGGAG | 450 |
AAGTTGCTGA TAGAAGAGAA CCAGATTCTG GCTAGCCAGG TGGGGAAGAA | 500 |
GACGTTTCTG GTTATAGAAG GTGACAGAGG AATGTCACGG GAAAATGGCT | 550 |
CCGGCAACAA AGTACCGGAG ACTCTTTCGC TGCTCAAGTA A | 600 |
>AT5G65060.1 longest ORF length:196
MGRRKVEIKR IENKSSRQVT FSKRRKGLIE KARQLSILCE SSIAVVAVSG | 50 |
SGKLYDSASG DNMSKIIDRY EIHHADELKA LDLAEKIRNY LPHKELLEIV | 100 |
QSKLEESNVD NVSVDSLISM EEQLETALSV IRAKKTELMM EDMKSLQERE | 150 |
KLLIEENQIL ASQVGKKTFL VIEGDRGMSR ENGSGNKVPE TLSLLK | 200 |